Cluster: C54.bin_6_CGC103
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 8
- Substrate:
- Genome ID: C54.bin_6
- CGC Family ID: CGCFAM_01055
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C54_scaffold_3399 | C54_scaffold_3399_1898 | 2699587 | 2703579 | + | 9.A.25.1.1 |
| pfam | C54_scaffold_3399 | C54_scaffold_3399_1899 | 2703694 | 2704437 | + | DAHP_synth_1 |
| TC | C54_scaffold_3399 | C54_scaffold_3399_1900 | 2704496 | 2706895 | + | 9.B.14.3.1 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_1901 | 2707196 | 2708335 | + | GH105 |
| TF | C54_scaffold_3399 | C54_scaffold_3399_1902 | 2708376 | 2712464 | + | HTH_AraC |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_1903 | 2712614 | 2713837 | + | GH88 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_1904 | 2713884 | 2716298 | + | GH2 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_1905 | 2716318 | 2717469 | + | PL38 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_1906 | 2717487 | 2718794 | + | GH105 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_1907 | 2718801 | 2720972 | + | PL8_3 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_1908 | 2721081 | 2723351 | + | GH95 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_1909 | 2723366 | 2724922 | + | PL29 |
Gene ID: C54_scaffold_3399_1898
Type: TC
Location: 2699587 - 2703579 (+)
Type: TC
Location: 2699587 - 2703579 (+)
Gene ID: C54_scaffold_3399_1899
Type: pfam
Location: 2703694 - 2704437 (+)
Type: pfam
Location: 2703694 - 2704437 (+)
Gene ID: C54_scaffold_3399_1900
Type: TC
Location: 2704496 - 2706895 (+)
Type: TC
Location: 2704496 - 2706895 (+)
Gene ID: C54_scaffold_3399_1901
Type: CAZyme
Location: 2707196 - 2708335 (+)
Type: CAZyme
Location: 2707196 - 2708335 (+)
Gene ID: C54_scaffold_3399_1902
Type: TF
Location: 2708376 - 2712464 (+)
Type: TF
Location: 2708376 - 2712464 (+)
Gene ID: C54_scaffold_3399_1903
Type: CAZyme
Location: 2712614 - 2713837 (+)
Type: CAZyme
Location: 2712614 - 2713837 (+)
Gene ID: C54_scaffold_3399_1904
Type: CAZyme
Location: 2713884 - 2716298 (+)
Type: CAZyme
Location: 2713884 - 2716298 (+)
Gene ID: C54_scaffold_3399_1905
Type: CAZyme
Location: 2716318 - 2717469 (+)
Type: CAZyme
Location: 2716318 - 2717469 (+)
Gene ID: C54_scaffold_3399_1906
Type: CAZyme
Location: 2717487 - 2718794 (+)
Type: CAZyme
Location: 2717487 - 2718794 (+)
Gene ID: C54_scaffold_3399_1907
Type: CAZyme
Location: 2718801 - 2720972 (+)
Type: CAZyme
Location: 2718801 - 2720972 (+)
Gene ID: C54_scaffold_3399_1908
Type: CAZyme
Location: 2721081 - 2723351 (+)
Type: CAZyme
Location: 2721081 - 2723351 (+)
Gene ID: C54_scaffold_3399_1909
Type: CAZyme
Location: 2723366 - 2724922 (+)
Type: CAZyme
Location: 2723366 - 2724922 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides intestinalis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C54_scaffold_3399_1898 | vegan > omnivore | 1.64318 | 0.01049 |
| C54_scaffold_3399_1898 | vegetarian > omnivore | 2.20419 | 0.00141 |
| C54_scaffold_3399_1899 | vegan > omnivore | 1.93778 | 0.01049 |
| C54_scaffold_3399_1899 | vegetarian > omnivore | 2.15815 | 0.00141 |
| C54_scaffold_3399_1900 | vegetarian > omnivore | 1.98555 | 0.00141 |
| C54_scaffold_3399_1900 | vegan > omnivore | 1.34204 | 0.01049 |
| C54_scaffold_3399_1901 | vegan > omnivore | 1.29525 | 0.01049 |
| C54_scaffold_3399_1901 | vegetarian > omnivore | 1.91244 | 0.00141 |
| C54_scaffold_3399_1902 | vegan > omnivore | 2.20367 | 0.01049 |
| C54_scaffold_3399_1902 | vegetarian > omnivore | 2.45720 | 0.00141 |
| C54_scaffold_3399_1903 | vegan > omnivore | 1.94990 | 0.01049 |
| C54_scaffold_3399_1903 | vegetarian > omnivore | 1.73790 | 0.00141 |
| C54_scaffold_3399_1904 | vegan > omnivore | 2.05408 | 0.01049 |
| C54_scaffold_3399_1904 | vegetarian > omnivore | 2.03362 | 0.00141 |
| C54_scaffold_3399_1905 | vegan > omnivore | 1.96748 | 0.01049 |
| C54_scaffold_3399_1905 | vegetarian > omnivore | 1.28463 | 0.00141 |
| C54_scaffold_3399_1906 | vegetarian > omnivore | 1.25248 | 0.00141 |
| C54_scaffold_3399_1906 | vegan > omnivore | 1.42004 | 0.01049 |
| C54_scaffold_3399_1907 | vegetarian > omnivore | 1.52774 | 0.00141 |
| C54_scaffold_3399_1907 | vegan > omnivore | 1.86483 | 0.01049 |
| C54_scaffold_3399_1908 | vegetarian > omnivore | 1.51075 | 0.00141 |
| C54_scaffold_3399_1908 | vegan > omnivore | 2.09369 | 0.01049 |
| C54_scaffold_3399_1909 | vegan > omnivore | 2.32136 | 0.01049 |
| C54_scaffold_3399_1909 | vegetarian > omnivore | 1.86385 | 0.00141 |