Cluster: C54.bin_6_CGC101
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 5
- Substrate: pectin/alpha-glucan
- Genome ID: C54.bin_6
- CGC Family ID: CGCFAM_00025
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_1816 | 2587883 | 2590450 | + | GH147 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_1817 | 2590498 | 2591682 | + | GH53 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_1818 | 2591708 | 2594185 | + | GH2 |
| TC | C54_scaffold_3399 | C54_scaffold_3399_1819 | 2595060 | 2598155 | + | 1.B.14.6.1 |
| TC | C54_scaffold_3399 | C54_scaffold_3399_1820 | 2598177 | 2599802 | + | 8.A.46.1.1 |
| pfam | C54_scaffold_3399 | C54_scaffold_3399_1821 | 2599825 | 2601009 | + | SusE |
| pfam | C54_scaffold_3399 | C54_scaffold_3399_1822 | 2601037 | 2602452 | + | SusF_SusE | SusF_N |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_1823 | 2602694 | 2605525 | + | GH13_10 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_1824 | 2605542 | 2607890 | + | GH133 |
Gene ID: C54_scaffold_3399_1816
Type: CAZyme
Location: 2587883 - 2590450 (+)
Type: CAZyme
Location: 2587883 - 2590450 (+)
Gene ID: C54_scaffold_3399_1817
Type: CAZyme
Location: 2590498 - 2591682 (+)
Type: CAZyme
Location: 2590498 - 2591682 (+)
Gene ID: C54_scaffold_3399_1818
Type: CAZyme
Location: 2591708 - 2594185 (+)
Type: CAZyme
Location: 2591708 - 2594185 (+)
Gene ID: C54_scaffold_3399_1819
Type: TC
Location: 2595060 - 2598155 (+)
Type: TC
Location: 2595060 - 2598155 (+)
Gene ID: C54_scaffold_3399_1820
Type: TC
Location: 2598177 - 2599802 (+)
Type: TC
Location: 2598177 - 2599802 (+)
Gene ID: C54_scaffold_3399_1821
Type: pfam
Location: 2599825 - 2601009 (+)
Type: pfam
Location: 2599825 - 2601009 (+)
Gene ID: C54_scaffold_3399_1822
Type: pfam
Location: 2601037 - 2602452 (+)
Type: pfam
Location: 2601037 - 2602452 (+)
Gene ID: C54_scaffold_3399_1823
Type: CAZyme
Location: 2602694 - 2605525 (+)
Type: CAZyme
Location: 2602694 - 2605525 (+)
Gene ID: C54_scaffold_3399_1824
Type: CAZyme
Location: 2605542 - 2607890 (+)
Type: CAZyme
Location: 2605542 - 2607890 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides intestinalis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C54_scaffold_3399_1816 | vegan > omnivore | 1.68527 | 0.01049 |
| C54_scaffold_3399_1816 | vegetarian > omnivore | 1.22721 | 0.00141 |
| C54_scaffold_3399_1823 | vegan > omnivore | 2.05136 | 0.01049 |
| C54_scaffold_3399_1823 | vegetarian > omnivore | 1.61557 | 0.00141 |
| C54_scaffold_3399_1824 | vegan > omnivore | 2.05940 | 0.01049 |
| C54_scaffold_3399_1824 | vegetarian > omnivore | 2.38719 | 0.00141 |