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Cluster: C54.bin_6_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme C54_contig_5485 C54_contig_5485_11 13392 15890 + GH115
CAZyme C54_contig_5485 C54_contig_5485_12 15913 17850 + CE20 | CE20
NULL(UNKNOWN) C54_contig_5485 C54_contig_5485_13 18441 18593 - NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) C54_contig_5485 C54_contig_5485_14 18790 18897 + NULL(UNKNOWN)
[View Structural Homologs]
TC C54_contig_5485 C54_contig_5485_15 19058 22219 + 1.B.14.6.1
pfam C54_contig_5485 C54_contig_5485_16 22231 24171 + SusD_RagB | SusD-like_3
TC C54_contig_5485 C54_contig_5485_17 24216 27080 + 1.B.14.6.1
Gene ID: C54_contig_5485_11
Type: CAZyme
Location: 13392 - 15890 (+)
Gene ID: C54_contig_5485_12
Type: CAZyme
Location: 15913 - 17850 (+)
Gene ID: C54_contig_5485_13
Type:
Location: 18441 - 18593 (-)
Gene ID: C54_contig_5485_14
Type:
Location: 18790 - 18897 (+)
Gene ID: C54_contig_5485_15
Type: TC
Location: 19058 - 22219 (+)
Gene ID: C54_contig_5485_16
Type: pfam
Location: 22231 - 24171 (+)
Gene ID: C54_contig_5485_17
Type: TC
Location: 24216 - 27080 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
C54_contig_5485_11 vegan > omnivore 2.45118 0.01049
C54_contig_5485_11 vegetarian > omnivore 2.89549 0.00141

🧭 Explore Read Mapping of CGC

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