Cluster: C50.bin_3_CGC47
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 4
- Substrate:
- Genome ID: C50.bin_3
- CGC Family ID: CGCFAM_00297
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C50_contig_11 | C50_contig_11_2471 | 2902421 | 2904115 | - | 2.A.21.3.19 |
| sulfatase | C50_contig_11 | C50_contig_11_2472 | 2904142 | 2905281 | - | S1_22 |
| CAZyme | C50_contig_11 | C50_contig_11_2473 | 2905447 | 2907339 | - | GH43_4 |
| NULL(UNKNOWN) | C50_contig_11 | C50_contig_11_2474 | 2907419 | 2909188 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | C50_contig_11 | C50_contig_11_2475 | 2909282 | 2911033 | - | SusD_RagB | SusD-like_3 |
| TC | C50_contig_11 | C50_contig_11_2476 | 2911072 | 2914266 | - | 1.B.14.6.1 |
| TF | C50_contig_11 | C50_contig_11_2477 | 2914643 | 2918950 | - | HTH_AraC |
| CAZyme | C50_contig_11 | C50_contig_11_2478 | 2919103 | 2920590 | + | GH43_4 |
| CAZyme | C50_contig_11 | C50_contig_11_2479 | 2920632 | 2922590 | + | GH51_2 |
| CAZyme | C50_contig_11 | C50_contig_11_2480 | 2922618 | 2923586 | + | GH43_29 |
| pfam | C50_contig_11 | C50_contig_11_2481 | 2923680 | 2924834 | - | GHMP_kinases_N | GHMP_kinases_C | GalKase_gal_bdg |
| TC | C50_contig_11 | C50_contig_11_2482 | 2924890 | 2926200 | - | 2.A.1.7.2 |
Gene ID: C50_contig_11_2471
Type: TC
Location: 2902421 - 2904115 (-)
Type: TC
Location: 2902421 - 2904115 (-)
Gene ID: C50_contig_11_2472
Type: sulfatase
Location: 2904142 - 2905281 (-)
Type: sulfatase
Location: 2904142 - 2905281 (-)
Gene ID: C50_contig_11_2473
Type: CAZyme
Location: 2905447 - 2907339 (-)
Type: CAZyme
Location: 2905447 - 2907339 (-)
Gene ID: C50_contig_11_2474
Type:
Location: 2907419 - 2909188 (-)
Type:
Location: 2907419 - 2909188 (-)
Gene ID: C50_contig_11_2475
Type: pfam
Location: 2909282 - 2911033 (-)
Type: pfam
Location: 2909282 - 2911033 (-)
Gene ID: C50_contig_11_2476
Type: TC
Location: 2911072 - 2914266 (-)
Type: TC
Location: 2911072 - 2914266 (-)
Gene ID: C50_contig_11_2477
Type: TF
Location: 2914643 - 2918950 (-)
Type: TF
Location: 2914643 - 2918950 (-)
Gene ID: C50_contig_11_2478
Type: CAZyme
Location: 2919103 - 2920590 (+)
Type: CAZyme
Location: 2919103 - 2920590 (+)
Gene ID: C50_contig_11_2479
Type: CAZyme
Location: 2920632 - 2922590 (+)
Type: CAZyme
Location: 2920632 - 2922590 (+)
Gene ID: C50_contig_11_2480
Type: CAZyme
Location: 2922618 - 2923586 (+)
Type: CAZyme
Location: 2922618 - 2923586 (+)
Gene ID: C50_contig_11_2481
Type: pfam
Location: 2923680 - 2924834 (-)
Type: pfam
Location: 2923680 - 2924834 (-)
Gene ID: C50_contig_11_2482
Type: TC
Location: 2924890 - 2926200 (-)
Type: TC
Location: 2924890 - 2926200 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides stercoris
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.