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Cluster: C50.bin_3_CGC42

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC C50_contig_11 C50_contig_11_2261 2639135 2640370 + 3.B.1.1.1
pfam C50_contig_11 C50_contig_11_2262 2640450 2641721 - OEP | OEP
TC C50_contig_11 C50_contig_11_2263 2641793 2644825 - 2.A.6.2.37
pfam C50_contig_11 C50_contig_11_2264 2644877 2645920 - HlyD_3 | Biotin_lipoyl_2 | HlyD_D23
CAZyme C50_contig_11 C50_contig_11_2265 2645940 2648258 - GH65
TC C50_contig_11 C50_contig_11_2266 2648525 2649895 - 2.A.2.6.2
TF C50_contig_11 C50_contig_11_2267 2649947 2651116 - LacI
CAZyme C50_contig_11 C50_contig_11_2268 2651241 2653724 + PL30
CAZyme C50_contig_11 C50_contig_11_2269 2653783 2654967 + GH53
CAZyme C50_contig_11 C50_contig_11_2270 2654987 2657461 + GH2
TC C50_contig_11 C50_contig_11_2271 2658294 2661380 + 1.B.14.6.1
TC C50_contig_11 C50_contig_11_2272 2661401 2663134 + 8.A.46.1.1
pfam C50_contig_11 C50_contig_11_2273 2663164 2664390 + SusE
pfam C50_contig_11 C50_contig_11_2274 2664417 2665550 + SusF_N
CAZyme C50_contig_11 C50_contig_11_2275 2665728 2667788 + GH13_36
Gene ID: C50_contig_11_2261
Type: TC
Location: 2639135 - 2640370 (+)
Gene ID: C50_contig_11_2262
Type: pfam
Location: 2640450 - 2641721 (-)
Gene ID: C50_contig_11_2263
Type: TC
Location: 2641793 - 2644825 (-)
Gene ID: C50_contig_11_2264
Type: pfam
Location: 2644877 - 2645920 (-)
Gene ID: C50_contig_11_2265
Type: CAZyme
Location: 2645940 - 2648258 (-)
Gene ID: C50_contig_11_2266
Type: TC
Location: 2648525 - 2649895 (-)
Gene ID: C50_contig_11_2267
Type: TF
Location: 2649947 - 2651116 (-)
Gene ID: C50_contig_11_2268
Type: CAZyme
Location: 2651241 - 2653724 (+)
Gene ID: C50_contig_11_2269
Type: CAZyme
Location: 2653783 - 2654967 (+)
Gene ID: C50_contig_11_2270
Type: CAZyme
Location: 2654987 - 2657461 (+)
Gene ID: C50_contig_11_2271
Type: TC
Location: 2658294 - 2661380 (+)
Gene ID: C50_contig_11_2272
Type: TC
Location: 2661401 - 2663134 (+)
Gene ID: C50_contig_11_2273
Type: pfam
Location: 2663164 - 2664390 (+)
Gene ID: C50_contig_11_2274
Type: pfam
Location: 2664417 - 2665550 (+)
Gene ID: C50_contig_11_2275
Type: CAZyme
Location: 2665728 - 2667788 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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