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Cluster: C50.bin_3_CGC41

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme C50_contig_11 C50_contig_11_2226 2584503 2586086 - GH32
pfam C50_contig_11 C50_contig_11_2227 2586100 2587506 - DUF4960
pfam C50_contig_11 C50_contig_11_2228 2587556 2589301 - SusD_RagB | SusD-like_3
TC C50_contig_11 C50_contig_11_2229 2589328 2592405 - 1.B.14.6.1
NULL(UNKNOWN) C50_contig_11 C50_contig_11_2230 2592410 2592613 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme C50_contig_11 C50_contig_11_2231 2592734 2594590 + GH32
TC C50_contig_11 C50_contig_11_2232 2594604 2595767 + 2.A.1.7.17
Gene ID: C50_contig_11_2226
Type: CAZyme
Location: 2584503 - 2586086 (-)
Gene ID: C50_contig_11_2227
Type: pfam
Location: 2586100 - 2587506 (-)
Gene ID: C50_contig_11_2228
Type: pfam
Location: 2587556 - 2589301 (-)
Gene ID: C50_contig_11_2229
Type: TC
Location: 2589328 - 2592405 (-)
Gene ID: C50_contig_11_2230
Type:
Location: 2592410 - 2592613 (+)
Gene ID: C50_contig_11_2231
Type: CAZyme
Location: 2592734 - 2594590 (+)
Gene ID: C50_contig_11_2232
Type: TC
Location: 2594604 - 2595767 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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