Cluster: C50.bin_3_CGC38
🧬 Cluster Details
- Gene Count: 28
- CAZyme Count: 19
- Substrate: xylan
- Genome ID: C50.bin_3
- CGC Family ID: CGCFAM_00273
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C50_contig_11 | C50_contig_11_2142 | 2456633 | 2458906 | + | GH10 | GH10 |
| CAZyme | C50_contig_11 | C50_contig_11_2143 | 2459020 | 2460999 | + | GH5_21 |
| pfam | C50_contig_11 | C50_contig_11_2144 | 2461084 | 2461425 | + | Glyco_hydro_10 |
| CAZyme | C50_contig_11 | C50_contig_11_2145 | 2461893 | 2463086 | + | CE1 |
| CAZyme | C50_contig_11 | C50_contig_11_2146 | 2463130 | 2465523 | + | CBM91 | GH43_10 |
| CAZyme | C50_contig_11 | C50_contig_11_2147 | 2465635 | 2468088 | - | GH31_4 |
| NULL(UNKNOWN) | C50_contig_11 | C50_contig_11_2148 | 2468150 | 2468239 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | C50_contig_11 | C50_contig_11_2149 | 2468349 | 2471456 | - | HTH_AraC |
| CAZyme | C50_contig_11 | C50_contig_11_2150 | 2471699 | 2473648 | + | GH97 |
| CAZyme | C50_contig_11 | C50_contig_11_2151 | 2473682 | 2476183 | + | CBM6 | CE1 | GH43_29 |
| CAZyme | C50_contig_11 | C50_contig_11_2152 | 2476208 | 2477977 | + | CE15 |
| CAZyme | C50_contig_11 | C50_contig_11_2153 | 2477952 | 2478650 | + | GH8 |
| CAZyme | C50_contig_11 | C50_contig_11_2154 | 2478675 | 2481926 | + | CE6 | GH95 |
| CAZyme | C50_contig_11 | C50_contig_11_2155 | 2481956 | 2483545 | + | CBM91 | GH43_10 |
| CAZyme | C50_contig_11 | C50_contig_11_2156 | 2483558 | 2486140 | + | GH115 |
| TF | C50_contig_11 | C50_contig_11_2157 | 2486369 | 2490460 | - | HTH_AraC |
| CAZyme | C50_contig_11 | C50_contig_11_2158 | 2490721 | 2492730 | - | GH67 |
| CAZyme | C50_contig_11 | C50_contig_11_2159 | 2492810 | 2493781 | - | GH43_1 |
| TC | C50_contig_11 | C50_contig_11_2160 | 2493871 | 2495367 | - | 2.A.2.3.4 |
| CAZyme | C50_contig_11 | C50_contig_11_2161 | 2495413 | 2496930 | - | CE20 | CE20 |
| CAZyme | C50_contig_11 | C50_contig_11_2162 | 2497087 | 2498592 | - | GH35 |
| CAZyme | C50_contig_11 | C50_contig_11_2163 | 2499247 | 2501118 | + | CE20 | CE20 |
| CAZyme | C50_contig_11 | C50_contig_11_2164 | 2501171 | 2502280 | + | GH10 |
| pfam | C50_contig_11 | C50_contig_11_2165 | 2502456 | 2504111 | - | DDE_Tnp_1 | DUF772 | DDE_Tnp_1_6 |
| CAZyme | C50_contig_11 | C50_contig_11_2166 | 2504322 | 2505542 | - | GH67 |
| pfam | C50_contig_11 | C50_contig_11_2167 | 2505608 | 2506333 | - | Glyco_hydro_67M |
| pfam | C50_contig_11 | C50_contig_11_2168 | 2506469 | 2508415 | - | SusD_RagB | SusD-like_3 |
| TC | C50_contig_11 | C50_contig_11_2169 | 2508431 | 2511496 | - | 1.B.14.6.1 |
Gene ID: C50_contig_11_2142
Type: CAZyme
Location: 2456633 - 2458906 (+)
Type: CAZyme
Location: 2456633 - 2458906 (+)
Gene ID: C50_contig_11_2143
Type: CAZyme
Location: 2459020 - 2460999 (+)
Type: CAZyme
Location: 2459020 - 2460999 (+)
Gene ID: C50_contig_11_2144
Type: pfam
Location: 2461084 - 2461425 (+)
Type: pfam
Location: 2461084 - 2461425 (+)
Gene ID: C50_contig_11_2145
Type: CAZyme
Location: 2461893 - 2463086 (+)
Type: CAZyme
Location: 2461893 - 2463086 (+)
Gene ID: C50_contig_11_2146
Type: CAZyme
Location: 2463130 - 2465523 (+)
Type: CAZyme
Location: 2463130 - 2465523 (+)
Gene ID: C50_contig_11_2147
Type: CAZyme
Location: 2465635 - 2468088 (-)
Type: CAZyme
Location: 2465635 - 2468088 (-)
Gene ID: C50_contig_11_2148
Type:
Location: 2468150 - 2468239 (-)
Type:
Location: 2468150 - 2468239 (-)
Gene ID: C50_contig_11_2149
Type: TF
Location: 2468349 - 2471456 (-)
Type: TF
Location: 2468349 - 2471456 (-)
Gene ID: C50_contig_11_2150
Type: CAZyme
Location: 2471699 - 2473648 (+)
Type: CAZyme
Location: 2471699 - 2473648 (+)
Gene ID: C50_contig_11_2151
Type: CAZyme
Location: 2473682 - 2476183 (+)
Type: CAZyme
Location: 2473682 - 2476183 (+)
Gene ID: C50_contig_11_2152
Type: CAZyme
Location: 2476208 - 2477977 (+)
Type: CAZyme
Location: 2476208 - 2477977 (+)
Gene ID: C50_contig_11_2153
Type: CAZyme
Location: 2477952 - 2478650 (+)
Type: CAZyme
Location: 2477952 - 2478650 (+)
Gene ID: C50_contig_11_2154
Type: CAZyme
Location: 2478675 - 2481926 (+)
Type: CAZyme
Location: 2478675 - 2481926 (+)
Gene ID: C50_contig_11_2155
Type: CAZyme
Location: 2481956 - 2483545 (+)
Type: CAZyme
Location: 2481956 - 2483545 (+)
Gene ID: C50_contig_11_2156
Type: CAZyme
Location: 2483558 - 2486140 (+)
Type: CAZyme
Location: 2483558 - 2486140 (+)
Gene ID: C50_contig_11_2157
Type: TF
Location: 2486369 - 2490460 (-)
Type: TF
Location: 2486369 - 2490460 (-)
Gene ID: C50_contig_11_2158
Type: CAZyme
Location: 2490721 - 2492730 (-)
Type: CAZyme
Location: 2490721 - 2492730 (-)
Gene ID: C50_contig_11_2159
Type: CAZyme
Location: 2492810 - 2493781 (-)
Type: CAZyme
Location: 2492810 - 2493781 (-)
Gene ID: C50_contig_11_2160
Type: TC
Location: 2493871 - 2495367 (-)
Type: TC
Location: 2493871 - 2495367 (-)
Gene ID: C50_contig_11_2161
Type: CAZyme
Location: 2495413 - 2496930 (-)
Type: CAZyme
Location: 2495413 - 2496930 (-)
Gene ID: C50_contig_11_2162
Type: CAZyme
Location: 2497087 - 2498592 (-)
Type: CAZyme
Location: 2497087 - 2498592 (-)
Gene ID: C50_contig_11_2163
Type: CAZyme
Location: 2499247 - 2501118 (+)
Type: CAZyme
Location: 2499247 - 2501118 (+)
Gene ID: C50_contig_11_2164
Type: CAZyme
Location: 2501171 - 2502280 (+)
Type: CAZyme
Location: 2501171 - 2502280 (+)
Gene ID: C50_contig_11_2165
Type: pfam
Location: 2502456 - 2504111 (-)
Type: pfam
Location: 2502456 - 2504111 (-)
Gene ID: C50_contig_11_2166
Type: CAZyme
Location: 2504322 - 2505542 (-)
Type: CAZyme
Location: 2504322 - 2505542 (-)
Gene ID: C50_contig_11_2167
Type: pfam
Location: 2505608 - 2506333 (-)
Type: pfam
Location: 2505608 - 2506333 (-)
Gene ID: C50_contig_11_2168
Type: pfam
Location: 2506469 - 2508415 (-)
Type: pfam
Location: 2506469 - 2508415 (-)
Gene ID: C50_contig_11_2169
Type: TC
Location: 2508431 - 2511496 (-)
Type: TC
Location: 2508431 - 2511496 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides stercoris
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.