Cluster: C50.bin_3_CGC14
🧬 Cluster Details
- Gene Count: 30
- CAZyme Count: 13
- Substrate:
- Genome ID: C50.bin_3
- CGC Family ID: CGCFAM_02731
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C50_contig_11 | C50_contig_11_683 | 722314 | 723912 | + | GH28 |
| pfam | C50_contig_11 | C50_contig_11_684 | 724024 | 725253 | + | DUF4861 |
| CAZyme | C50_contig_11 | C50_contig_11_685 | 725278 | 726954 | + | CBM91 | GH43_10 |
| pfam | C50_contig_11 | C50_contig_11_686 | 727116 | 727766 | + | Hydrolase | Hydrolase_like | HAD_2 |
| CAZyme | C50_contig_11 | C50_contig_11_687 | 727773 | 730250 | + | GH95 |
| CAZyme | C50_contig_11 | C50_contig_11_688 | 730490 | 731965 | - | PL1_2 |
| CAZyme | C50_contig_11 | C50_contig_11_689 | 731994 | 733682 | - | PL1_2 |
| CAZyme | C50_contig_11 | C50_contig_11_690 | 733725 | 735332 | - | PL1_2 |
| CAZyme | C50_contig_11 | C50_contig_11_691 | 735391 | 737115 | - | CE8 |
| NULL(UNKNOWN) | C50_contig_11 | C50_contig_11_692 | 737139 | 739019 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | C50_contig_11 | C50_contig_11_693 | 739038 | 740975 | - | SusD_RagB | SusD-like_3 |
| TC | C50_contig_11 | C50_contig_11_694 | 740998 | 744264 | - | 1.B.14.6.1 |
| pfam | C50_contig_11 | C50_contig_11_695 | 744527 | 745165 | - | Bac_DNA_binding | HU-HIG |
| pfam | C50_contig_11 | C50_contig_11_696 | 745498 | 746715 | + | VapE-like_dom | DUF3874 |
| TC | C50_contig_11 | C50_contig_11_697 | 746976 | 750185 | + | 1.B.14.6.1 |
| TC | C50_contig_11 | C50_contig_11_698 | 750198 | 751910 | + | 8.A.46.1.6 |
| CAZyme | C50_contig_11 | C50_contig_11_699 | 751922 | 753016 | + | PL10_1 |
| NULL(UNKNOWN) | C50_contig_11 | C50_contig_11_700 | 753102 | 753212 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | C50_contig_11 | C50_contig_11_701 | 753292 | 757797 | - | HTH_AraC |
| CAZyme | C50_contig_11 | C50_contig_11_702 | 757842 | 759008 | + | CE19 |
| CAZyme | C50_contig_11 | C50_contig_11_703 | 759061 | 760380 | - | CE7 |
| CAZyme | C50_contig_11 | C50_contig_11_704 | 760400 | 762166 | - | CE12 | CE8 |
| STP | C50_contig_11 | C50_contig_11_705 | 762226 | 762573 | + | AraC_binding |
| CAZyme | C50_contig_11 | C50_contig_11_706 | 762581 | 763552 | - | CE8 |
| CAZyme | C50_contig_11 | C50_contig_11_707 | 763549 | 764772 | - | GH105 |
| TC | C50_contig_11 | C50_contig_11_708 | 765065 | 766438 | + | 4.A.5.1.2 |
| pfam | C50_contig_11 | C50_contig_11_709 | 766484 | 767440 | + | KduI |
| TC | C50_contig_11 | C50_contig_11_710 | 767583 | 769046 | + | 2.A.1.14.25 |
| pfam | C50_contig_11 | C50_contig_11_711 | 769359 | 772781 | - | AAA_11 | AAA_11 | AAA_12 | AAA_19 | AAA_30 |
| TC | C50_contig_11 | C50_contig_11_712 | 772778 | 773602 | - | 2.A.64.2.1 |
Gene ID: C50_contig_11_683
Type: CAZyme
Location: 722314 - 723912 (+)
Type: CAZyme
Location: 722314 - 723912 (+)
Gene ID: C50_contig_11_684
Type: pfam
Location: 724024 - 725253 (+)
Type: pfam
Location: 724024 - 725253 (+)
Gene ID: C50_contig_11_685
Type: CAZyme
Location: 725278 - 726954 (+)
Type: CAZyme
Location: 725278 - 726954 (+)
Gene ID: C50_contig_11_686
Type: pfam
Location: 727116 - 727766 (+)
Type: pfam
Location: 727116 - 727766 (+)
Gene ID: C50_contig_11_687
Type: CAZyme
Location: 727773 - 730250 (+)
Type: CAZyme
Location: 727773 - 730250 (+)
Gene ID: C50_contig_11_688
Type: CAZyme
Location: 730490 - 731965 (-)
Type: CAZyme
Location: 730490 - 731965 (-)
Gene ID: C50_contig_11_689
Type: CAZyme
Location: 731994 - 733682 (-)
Type: CAZyme
Location: 731994 - 733682 (-)
Gene ID: C50_contig_11_690
Type: CAZyme
Location: 733725 - 735332 (-)
Type: CAZyme
Location: 733725 - 735332 (-)
Gene ID: C50_contig_11_691
Type: CAZyme
Location: 735391 - 737115 (-)
Type: CAZyme
Location: 735391 - 737115 (-)
Gene ID: C50_contig_11_692
Type:
Location: 737139 - 739019 (-)
Type:
Location: 737139 - 739019 (-)
Gene ID: C50_contig_11_693
Type: pfam
Location: 739038 - 740975 (-)
Type: pfam
Location: 739038 - 740975 (-)
Gene ID: C50_contig_11_694
Type: TC
Location: 740998 - 744264 (-)
Type: TC
Location: 740998 - 744264 (-)
Gene ID: C50_contig_11_695
Type: pfam
Location: 744527 - 745165 (-)
Type: pfam
Location: 744527 - 745165 (-)
Gene ID: C50_contig_11_696
Type: pfam
Location: 745498 - 746715 (+)
Type: pfam
Location: 745498 - 746715 (+)
Gene ID: C50_contig_11_697
Type: TC
Location: 746976 - 750185 (+)
Type: TC
Location: 746976 - 750185 (+)
Gene ID: C50_contig_11_698
Type: TC
Location: 750198 - 751910 (+)
Type: TC
Location: 750198 - 751910 (+)
Gene ID: C50_contig_11_699
Type: CAZyme
Location: 751922 - 753016 (+)
Type: CAZyme
Location: 751922 - 753016 (+)
Gene ID: C50_contig_11_700
Type:
Location: 753102 - 753212 (-)
Type:
Location: 753102 - 753212 (-)
Gene ID: C50_contig_11_701
Type: TF
Location: 753292 - 757797 (-)
Type: TF
Location: 753292 - 757797 (-)
Gene ID: C50_contig_11_702
Type: CAZyme
Location: 757842 - 759008 (+)
Type: CAZyme
Location: 757842 - 759008 (+)
Gene ID: C50_contig_11_703
Type: CAZyme
Location: 759061 - 760380 (-)
Type: CAZyme
Location: 759061 - 760380 (-)
Gene ID: C50_contig_11_704
Type: CAZyme
Location: 760400 - 762166 (-)
Type: CAZyme
Location: 760400 - 762166 (-)
Gene ID: C50_contig_11_705
Type: STP
Location: 762226 - 762573 (+)
Type: STP
Location: 762226 - 762573 (+)
Gene ID: C50_contig_11_706
Type: CAZyme
Location: 762581 - 763552 (-)
Type: CAZyme
Location: 762581 - 763552 (-)
Gene ID: C50_contig_11_707
Type: CAZyme
Location: 763549 - 764772 (-)
Type: CAZyme
Location: 763549 - 764772 (-)
Gene ID: C50_contig_11_708
Type: TC
Location: 765065 - 766438 (+)
Type: TC
Location: 765065 - 766438 (+)
Gene ID: C50_contig_11_709
Type: pfam
Location: 766484 - 767440 (+)
Type: pfam
Location: 766484 - 767440 (+)
Gene ID: C50_contig_11_710
Type: TC
Location: 767583 - 769046 (+)
Type: TC
Location: 767583 - 769046 (+)
Gene ID: C50_contig_11_711
Type: pfam
Location: 769359 - 772781 (-)
Type: pfam
Location: 769359 - 772781 (-)
Gene ID: C50_contig_11_712
Type: TC
Location: 772778 - 773602 (-)
Type: TC
Location: 772778 - 773602 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides stercoris
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.