Cluster: C46.CMAG_1_CGC37
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 6
- Substrate:
- Genome ID: C46.CMAG_1
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C46_contig_1457 | C46_contig_1457_1481 | 1821392 | 1824511 | + | GH38 |
| CAZyme | C46_contig_1457 | C46_contig_1457_1482 | 1824633 | 1827785 | + | GH38 |
| STP | C46_contig_1457 | C46_contig_1457_1483 | 1828173 | 1829465 | + | SBP_bac_1 |
| TC | C46_contig_1457 | C46_contig_1457_1484 | 1829462 | 1830433 | + | 3.A.1.1.41 |
| TC | C46_contig_1457 | C46_contig_1457_1485 | 1830433 | 1831272 | + | 3.A.1.1.20 |
| CAZyme | C46_contig_1457 | C46_contig_1457_1486 | 1831300 | 1832580 | + | GH5_18 |
| CAZyme | C46_contig_1457 | C46_contig_1457_1487 | 1832739 | 1835018 | + | GH3 |
| CAZyme | C46_contig_1457 | C46_contig_1457_1488 | 1835253 | 1838636 | + | GH85 |
| TF | C46_contig_1457 | C46_contig_1457_1489 | 1838878 | 1839987 | + | LacI |
| pfam | C46_contig_1457 | C46_contig_1457_1490 | 1840099 | 1841334 | - | GlcNAc_2-epim |
| CAZyme | C46_contig_1457 | C46_contig_1457_1491 | 1841401 | 1842699 | - | GH125 |
| TC | C46_contig_1457 | C46_contig_1457_1492 | 1842974 | 1843276 | - | 2.A.1.7.5 |
Gene ID: C46_contig_1457_1481
Type: CAZyme
Location: 1821392 - 1824511 (+)
Type: CAZyme
Location: 1821392 - 1824511 (+)
Gene ID: C46_contig_1457_1482
Type: CAZyme
Location: 1824633 - 1827785 (+)
Type: CAZyme
Location: 1824633 - 1827785 (+)
Gene ID: C46_contig_1457_1483
Type: STP
Location: 1828173 - 1829465 (+)
Type: STP
Location: 1828173 - 1829465 (+)
Gene ID: C46_contig_1457_1484
Type: TC
Location: 1829462 - 1830433 (+)
Type: TC
Location: 1829462 - 1830433 (+)
Gene ID: C46_contig_1457_1485
Type: TC
Location: 1830433 - 1831272 (+)
Type: TC
Location: 1830433 - 1831272 (+)
Gene ID: C46_contig_1457_1486
Type: CAZyme
Location: 1831300 - 1832580 (+)
Type: CAZyme
Location: 1831300 - 1832580 (+)
Gene ID: C46_contig_1457_1487
Type: CAZyme
Location: 1832739 - 1835018 (+)
Type: CAZyme
Location: 1832739 - 1835018 (+)
Gene ID: C46_contig_1457_1488
Type: CAZyme
Location: 1835253 - 1838636 (+)
Type: CAZyme
Location: 1835253 - 1838636 (+)
Gene ID: C46_contig_1457_1489
Type: TF
Location: 1838878 - 1839987 (+)
Type: TF
Location: 1838878 - 1839987 (+)
Gene ID: C46_contig_1457_1490
Type: pfam
Location: 1840099 - 1841334 (-)
Type: pfam
Location: 1840099 - 1841334 (-)
Gene ID: C46_contig_1457_1491
Type: CAZyme
Location: 1841401 - 1842699 (-)
Type: CAZyme
Location: 1841401 - 1842699 (-)
Gene ID: C46_contig_1457_1492
Type: TC
Location: 1842974 - 1843276 (-)
Type: TC
Location: 1842974 - 1843276 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Bifidobacterium
Species
Bifidobacterium longum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C46_contig_1457_1481 | vegetarian > omnivore | 1.20920 | 0.01548 |
| C46_contig_1457_1481 | vegetarian > vegan | 1.03485 | 0.02252 |
| C46_contig_1457_1482 | vegetarian > omnivore | 1.04160 | 0.01548 |
| C46_contig_1457_1483 | vegetarian > vegan | 1.01173 | 0.03474 |
| C46_contig_1457_1485 | vegetarian > omnivore | 1.20822 | 0.01548 |
| C46_contig_1457_1486 | vegetarian > omnivore | 1.00189 | 0.01548 |
| C46_contig_1457_1488 | vegetarian > omnivore | 1.18478 | 0.01548 |
| C46_contig_1457_1489 | vegetarian > omnivore | 1.25400 | 0.01548 |
| C46_contig_1457_1491 | vegetarian > omnivore | 1.25162 | 0.01548 |