Cluster: C37.bin_1_CGC8
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 6
- Substrate:
- Genome ID: C37.bin_1
- CGC Family ID: CGCFAM_06502
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C37_contig_781 | C37_contig_781_307 | 391259 | 392434 | - | GT2 |
| pfam | C37_contig_781 | C37_contig_781_308 | 392739 | 393542 | + | Poly_export |
| TC | C37_contig_781 | C37_contig_781_309 | 393561 | 395885 | + | 8.A.3.3.4 |
| pfam | C37_contig_781 | C37_contig_781_310 | 395875 | 397230 | + | Polysacc_synt |
| NULL(UNKNOWN) | C37_contig_781 | C37_contig_781_311 | 397218 | 398468 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | C37_contig_781 | C37_contig_781_312 | 398479 | 399765 | + | GT4 |
| CAZyme | C37_contig_781 | C37_contig_781_313 | 399731 | 400492 | + | GT2 |
| CAZyme | C37_contig_781 | C37_contig_781_314 | 400553 | 401758 | + | GT4 |
| CAZyme | C37_contig_781 | C37_contig_781_315 | 401860 | 402828 | + | GT2 |
| pfam | C37_contig_781 | C37_contig_781_316 | 402976 | 403674 | + | Hexapep | Hexapep_2 |
| pfam | C37_contig_781 | C37_contig_781_317 | 403753 | 404817 | + | Radical_SAM | SPASM |
| CAZyme | C37_contig_781 | C37_contig_781_318 | 404902 | 406017 | + | GT4 |
Gene ID: C37_contig_781_307
Type: CAZyme
Location: 391259 - 392434 (-)
Type: CAZyme
Location: 391259 - 392434 (-)
Gene ID: C37_contig_781_308
Type: pfam
Location: 392739 - 393542 (+)
Type: pfam
Location: 392739 - 393542 (+)
Gene ID: C37_contig_781_309
Type: TC
Location: 393561 - 395885 (+)
Type: TC
Location: 393561 - 395885 (+)
Gene ID: C37_contig_781_310
Type: pfam
Location: 395875 - 397230 (+)
Type: pfam
Location: 395875 - 397230 (+)
Gene ID: C37_contig_781_311
Type:
Location: 397218 - 398468 (+)
Type:
Location: 397218 - 398468 (+)
Gene ID: C37_contig_781_312
Type: CAZyme
Location: 398479 - 399765 (+)
Type: CAZyme
Location: 398479 - 399765 (+)
Gene ID: C37_contig_781_313
Type: CAZyme
Location: 399731 - 400492 (+)
Type: CAZyme
Location: 399731 - 400492 (+)
Gene ID: C37_contig_781_314
Type: CAZyme
Location: 400553 - 401758 (+)
Type: CAZyme
Location: 400553 - 401758 (+)
Gene ID: C37_contig_781_315
Type: CAZyme
Location: 401860 - 402828 (+)
Type: CAZyme
Location: 401860 - 402828 (+)
Gene ID: C37_contig_781_316
Type: pfam
Location: 402976 - 403674 (+)
Type: pfam
Location: 402976 - 403674 (+)
Gene ID: C37_contig_781_317
Type: pfam
Location: 403753 - 404817 (+)
Type: pfam
Location: 403753 - 404817 (+)
Gene ID: C37_contig_781_318
Type: CAZyme
Location: 404902 - 406017 (+)
Type: CAZyme
Location: 404902 - 406017 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Coprobacteraceae
Genus
Coprobacter
Species
Coprobacter fastidiosus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.