Cluster: C37.bin_1_CGC7
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 3
- Substrate:
- Genome ID: C37.bin_1
- CGC Family ID: CGCFAM_07974
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C37_contig_781 | C37_contig_781_268 | 339229 | 340083 | + | 3.D.6.1.2 |
| TC | C37_contig_781 | C37_contig_781_269 | 340143 | 341480 | + | 3.D.6.1.2 |
| TC | C37_contig_781 | C37_contig_781_270 | 341502 | 342452 | + | 3.D.6.1.2 |
| TC | C37_contig_781 | C37_contig_781_271 | 342445 | 343068 | + | 3.D.6.1.3 |
| TC | C37_contig_781 | C37_contig_781_272 | 343084 | 343668 | + | 3.D.6.1.2 |
| TC | C37_contig_781 | C37_contig_781_273 | 343672 | 344253 | + | 3.D.6.1.2 |
| pfam | C37_contig_781 | C37_contig_781_274 | 344330 | 345481 | - | Cyt_bd_oxida_II |
| TC | C37_contig_781 | C37_contig_781_275 | 345488 | 347044 | - | 3.D.4.3.2 |
| pfam | C37_contig_781 | C37_contig_781_276 | 347072 | 347314 | - | DUF4492 |
| pfam | C37_contig_781 | C37_contig_781_277 | 347471 | 347977 | - | Ferritin | Rubrerythrin |
| CAZyme | C37_contig_781 | C37_contig_781_278 | 348112 | 351219 | - | GH30_4 |
| TF | C37_contig_781 | C37_contig_781_279 | 351896 | 355963 | + | HTH_AraC |
| NULL(UNKNOWN) | C37_contig_781 | C37_contig_781_280 | 356033 | 358876 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | C37_contig_781 | C37_contig_781_281 | 358914 | 360914 | - | 1.B.14.6.8 |
| pfam | C37_contig_781 | C37_contig_781_282 | 360977 | 361528 | - | DUF3575 |
| CAZyme | C37_contig_781 | C37_contig_781_283 | 361961 | 363889 | + | GT20 |
| CAZyme | C37_contig_781 | C37_contig_781_284 | 364229 | 366022 | + | GH15 |
Gene ID: C37_contig_781_268
Type: TC
Location: 339229 - 340083 (+)
Type: TC
Location: 339229 - 340083 (+)
Gene ID: C37_contig_781_269
Type: TC
Location: 340143 - 341480 (+)
Type: TC
Location: 340143 - 341480 (+)
Gene ID: C37_contig_781_270
Type: TC
Location: 341502 - 342452 (+)
Type: TC
Location: 341502 - 342452 (+)
Gene ID: C37_contig_781_271
Type: TC
Location: 342445 - 343068 (+)
Type: TC
Location: 342445 - 343068 (+)
Gene ID: C37_contig_781_272
Type: TC
Location: 343084 - 343668 (+)
Type: TC
Location: 343084 - 343668 (+)
Gene ID: C37_contig_781_273
Type: TC
Location: 343672 - 344253 (+)
Type: TC
Location: 343672 - 344253 (+)
Gene ID: C37_contig_781_274
Type: pfam
Location: 344330 - 345481 (-)
Type: pfam
Location: 344330 - 345481 (-)
Gene ID: C37_contig_781_275
Type: TC
Location: 345488 - 347044 (-)
Type: TC
Location: 345488 - 347044 (-)
Gene ID: C37_contig_781_276
Type: pfam
Location: 347072 - 347314 (-)
Type: pfam
Location: 347072 - 347314 (-)
Gene ID: C37_contig_781_277
Type: pfam
Location: 347471 - 347977 (-)
Type: pfam
Location: 347471 - 347977 (-)
Gene ID: C37_contig_781_278
Type: CAZyme
Location: 348112 - 351219 (-)
Type: CAZyme
Location: 348112 - 351219 (-)
Gene ID: C37_contig_781_279
Type: TF
Location: 351896 - 355963 (+)
Type: TF
Location: 351896 - 355963 (+)
Gene ID: C37_contig_781_280
Type:
Location: 356033 - 358876 (-)
Type:
Location: 356033 - 358876 (-)
Gene ID: C37_contig_781_281
Type: TC
Location: 358914 - 360914 (-)
Type: TC
Location: 358914 - 360914 (-)
Gene ID: C37_contig_781_282
Type: pfam
Location: 360977 - 361528 (-)
Type: pfam
Location: 360977 - 361528 (-)
Gene ID: C37_contig_781_283
Type: CAZyme
Location: 361961 - 363889 (+)
Type: CAZyme
Location: 361961 - 363889 (+)
Gene ID: C37_contig_781_284
Type: CAZyme
Location: 364229 - 366022 (+)
Type: CAZyme
Location: 364229 - 366022 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Coprobacteraceae
Genus
Coprobacter
Species
Coprobacter fastidiosus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.