Cluster: C37.bin_1_CGC60
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 7
- Substrate:
- Genome ID: C37.bin_1
- CGC Family ID: CGCFAM_00494
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C37_contig_1551 | C37_contig_1551_1882 | 2350820 | 2351959 | - | GT4 |
| pfam | C37_contig_1551 | C37_contig_1551_1883 | 2351961 | 2352980 | - | Acyl_transf_3 |
| CAZyme | C37_contig_1551 | C37_contig_1551_1884 | 2352994 | 2354100 | - | GT4 |
| pfam | C37_contig_1551 | C37_contig_1551_1885 | 2354126 | 2355364 | - | Wzy_C |
| NULL(UNKNOWN) | C37_contig_1551 | C37_contig_1551_1886 | 2355578 | 2356111 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | C37_contig_1551 | C37_contig_1551_1887 | 2356128 | 2357297 | - | GT4 |
| CAZyme | C37_contig_1551 | C37_contig_1551_1888 | 2357467 | 2358651 | - | GT4 |
| CAZyme | C37_contig_1551 | C37_contig_1551_1889 | 2358648 | 2359829 | - | GT4 |
| CAZyme | C37_contig_1551 | C37_contig_1551_1890 | 2359826 | 2360785 | - | GT2 |
| CAZyme | C37_contig_1551 | C37_contig_1551_1891 | 2360790 | 2361674 | - | GT101 |
| NULL(UNKNOWN) | C37_contig_1551 | C37_contig_1551_1892 | 2361686 | 2362513 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | C37_contig_1551 | C37_contig_1551_1893 | 2362510 | 2363952 | - | 2.A.66.2.6 |
Gene ID: C37_contig_1551_1882
Type: CAZyme
Location: 2350820 - 2351959 (-)
Type: CAZyme
Location: 2350820 - 2351959 (-)
Gene ID: C37_contig_1551_1883
Type: pfam
Location: 2351961 - 2352980 (-)
Type: pfam
Location: 2351961 - 2352980 (-)
Gene ID: C37_contig_1551_1884
Type: CAZyme
Location: 2352994 - 2354100 (-)
Type: CAZyme
Location: 2352994 - 2354100 (-)
Gene ID: C37_contig_1551_1885
Type: pfam
Location: 2354126 - 2355364 (-)
Type: pfam
Location: 2354126 - 2355364 (-)
Gene ID: C37_contig_1551_1886
Type:
Location: 2355578 - 2356111 (-)
Type:
Location: 2355578 - 2356111 (-)
Gene ID: C37_contig_1551_1887
Type: CAZyme
Location: 2356128 - 2357297 (-)
Type: CAZyme
Location: 2356128 - 2357297 (-)
Gene ID: C37_contig_1551_1888
Type: CAZyme
Location: 2357467 - 2358651 (-)
Type: CAZyme
Location: 2357467 - 2358651 (-)
Gene ID: C37_contig_1551_1889
Type: CAZyme
Location: 2358648 - 2359829 (-)
Type: CAZyme
Location: 2358648 - 2359829 (-)
Gene ID: C37_contig_1551_1890
Type: CAZyme
Location: 2359826 - 2360785 (-)
Type: CAZyme
Location: 2359826 - 2360785 (-)
Gene ID: C37_contig_1551_1891
Type: CAZyme
Location: 2360790 - 2361674 (-)
Type: CAZyme
Location: 2360790 - 2361674 (-)
Gene ID: C37_contig_1551_1892
Type:
Location: 2361686 - 2362513 (-)
Type:
Location: 2361686 - 2362513 (-)
Gene ID: C37_contig_1551_1893
Type: TC
Location: 2362510 - 2363952 (-)
Type: TC
Location: 2362510 - 2363952 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Coprobacteraceae
Genus
Coprobacter
Species
Coprobacter fastidiosus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.