Cluster: C37.bin_1_CGC42
🧬 Cluster Details
- Gene Count: 21
- CAZyme Count: 14
- Substrate:
- Genome ID: C37.bin_1
- CGC Family ID: CGCFAM_01254
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C37_contig_1551 | C37_contig_1551_760 | 959475 | 961913 | - | GH2 |
| NULL(UNKNOWN) | C37_contig_1551 | C37_contig_1551_761 | 961914 | 962039 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | C37_contig_1551 | C37_contig_1551_762 | 962029 | 963027 | - | GH43_2 |
| CAZyme | C37_contig_1551 | C37_contig_1551_763 | 963121 | 965688 | - | GH3 |
| CAZyme | C37_contig_1551 | C37_contig_1551_764 | 965701 | 967095 | - | GH30_2 |
| CAZyme | C37_contig_1551 | C37_contig_1551_765 | 967149 | 968570 | - | GH30_2 |
| CAZyme | C37_contig_1551 | C37_contig_1551_766 | 968581 | 969999 | - | GH30_2 |
| CAZyme | C37_contig_1551 | C37_contig_1551_767 | 970168 | 972420 | - | GH92 |
| pfam | C37_contig_1551 | C37_contig_1551_768 | 972550 | 973503 | - | BT_3987-like_N | BT_3044-like_C |
| pfam | C37_contig_1551 | C37_contig_1551_769 | 973536 | 975560 | - | SusD_RagB | SusD-like_3 |
| TC | C37_contig_1551 | C37_contig_1551_770 | 975591 | 978710 | - | 1.B.14.6.1 |
| pfam | C37_contig_1551 | C37_contig_1551_771 | 978745 | 980076 | - | NHL | TIG |
| CAZyme | C37_contig_1551 | C37_contig_1551_772 | 980138 | 982297 | - | GH36 |
| CAZyme | C37_contig_1551 | C37_contig_1551_773 | 982754 | 984205 | - | GH125 |
| CAZyme | C37_contig_1551 | C37_contig_1551_774 | 984225 | 986525 | - | GH92 |
| CAZyme | C37_contig_1551 | C37_contig_1551_775 | 986507 | 988507 | - | GH2 |
| TF | C37_contig_1551 | C37_contig_1551_776 | 988714 | 992700 | + | HTH_AraC |
| CAZyme | C37_contig_1551 | C37_contig_1551_777 | 992739 | 993776 | + | GH43_24 |
| pfam | C37_contig_1551 | C37_contig_1551_778 | 994125 | 996149 | + | FG-GAP_3 | FG-GAP_3 | FG-GAP_3 | FG-GAP_3 |
| CAZyme | C37_contig_1551 | C37_contig_1551_779 | 996273 | 999200 | + | GH2 |
| CAZyme | C37_contig_1551 | C37_contig_1551_780 | 999307 | 1001247 | + | CE20 | CE20 |
Gene ID: C37_contig_1551_760
Type: CAZyme
Location: 959475 - 961913 (-)
Type: CAZyme
Location: 959475 - 961913 (-)
Gene ID: C37_contig_1551_761
Type:
Location: 961914 - 962039 (+)
Type:
Location: 961914 - 962039 (+)
Gene ID: C37_contig_1551_762
Type: CAZyme
Location: 962029 - 963027 (-)
Type: CAZyme
Location: 962029 - 963027 (-)
Gene ID: C37_contig_1551_763
Type: CAZyme
Location: 963121 - 965688 (-)
Type: CAZyme
Location: 963121 - 965688 (-)
Gene ID: C37_contig_1551_764
Type: CAZyme
Location: 965701 - 967095 (-)
Type: CAZyme
Location: 965701 - 967095 (-)
Gene ID: C37_contig_1551_765
Type: CAZyme
Location: 967149 - 968570 (-)
Type: CAZyme
Location: 967149 - 968570 (-)
Gene ID: C37_contig_1551_766
Type: CAZyme
Location: 968581 - 969999 (-)
Type: CAZyme
Location: 968581 - 969999 (-)
Gene ID: C37_contig_1551_767
Type: CAZyme
Location: 970168 - 972420 (-)
Type: CAZyme
Location: 970168 - 972420 (-)
Gene ID: C37_contig_1551_768
Type: pfam
Location: 972550 - 973503 (-)
Type: pfam
Location: 972550 - 973503 (-)
Gene ID: C37_contig_1551_769
Type: pfam
Location: 973536 - 975560 (-)
Type: pfam
Location: 973536 - 975560 (-)
Gene ID: C37_contig_1551_770
Type: TC
Location: 975591 - 978710 (-)
Type: TC
Location: 975591 - 978710 (-)
Gene ID: C37_contig_1551_771
Type: pfam
Location: 978745 - 980076 (-)
Type: pfam
Location: 978745 - 980076 (-)
Gene ID: C37_contig_1551_772
Type: CAZyme
Location: 980138 - 982297 (-)
Type: CAZyme
Location: 980138 - 982297 (-)
Gene ID: C37_contig_1551_773
Type: CAZyme
Location: 982754 - 984205 (-)
Type: CAZyme
Location: 982754 - 984205 (-)
Gene ID: C37_contig_1551_774
Type: CAZyme
Location: 984225 - 986525 (-)
Type: CAZyme
Location: 984225 - 986525 (-)
Gene ID: C37_contig_1551_775
Type: CAZyme
Location: 986507 - 988507 (-)
Type: CAZyme
Location: 986507 - 988507 (-)
Gene ID: C37_contig_1551_776
Type: TF
Location: 988714 - 992700 (+)
Type: TF
Location: 988714 - 992700 (+)
Gene ID: C37_contig_1551_777
Type: CAZyme
Location: 992739 - 993776 (+)
Type: CAZyme
Location: 992739 - 993776 (+)
Gene ID: C37_contig_1551_778
Type: pfam
Location: 994125 - 996149 (+)
Type: pfam
Location: 994125 - 996149 (+)
Gene ID: C37_contig_1551_779
Type: CAZyme
Location: 996273 - 999200 (+)
Type: CAZyme
Location: 996273 - 999200 (+)
Gene ID: C37_contig_1551_780
Type: CAZyme
Location: 999307 - 1001247 (+)
Type: CAZyme
Location: 999307 - 1001247 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Coprobacteraceae
Genus
Coprobacter
Species
Coprobacter fastidiosus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.