Cluster: C37.bin_1_CGC3
🧬 Cluster Details
- Gene Count: 18
- CAZyme Count: 8
- Substrate:
- Genome ID: C37.bin_1
- CGC Family ID: CGCFAM_05228
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C37_contig_781 | C37_contig_781_139 | 161731 | 163677 | - | GH59 |
| CAZyme | C37_contig_781 | C37_contig_781_140 | 163674 | 164786 | - | GH105 |
| sulfatase | C37_contig_781 | C37_contig_781_141 | 164806 | 166332 | - | S1_16 |
| sulfatase | C37_contig_781 | C37_contig_781_142 | 166345 | 168099 | - | S1_36 |
| CAZyme | C37_contig_781 | C37_contig_781_143 | 168112 | 169695 | - | GH30_4 |
| CAZyme | C37_contig_781 | C37_contig_781_144 | 169708 | 171696 | - | GH2 |
| CAZyme | C37_contig_781 | C37_contig_781_145 | 171996 | 173651 | - | PL17 |
| sulfatase | C37_contig_781 | C37_contig_781_146 | 173664 | 174377 | - | S1_8 |
| CAZyme | C37_contig_781 | C37_contig_781_147 | 174390 | 177143 | - | GH2 |
| pfam | C37_contig_781 | C37_contig_781_148 | 177179 | 178051 | - | Exo_endo_phos |
| CAZyme | C37_contig_781 | C37_contig_781_149 | 178147 | 181320 | - | GH30_4 |
| NULL(UNKNOWN) | C37_contig_781 | C37_contig_781_150 | 181407 | 182492 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | C37_contig_781 | C37_contig_781_151 | 182509 | 184248 | - | SusD_RagB | SusD-like_3 |
| TC | C37_contig_781 | C37_contig_781_152 | 184261 | 187419 | - | 1.B.14.6.1 |
| pfam | C37_contig_781 | C37_contig_781_153 | 187573 | 189378 | - | Por_Secre_tail |
| CAZyme | C37_contig_781 | C37_contig_781_154 | 189569 | 192370 | - | GH2 |
| STP | C37_contig_781 | C37_contig_781_155 | 192580 | 195921 | - | TPR_1 | TPR_1 | TPR_2 |
| TC | C37_contig_781 | C37_contig_781_156 | 195933 | 197318 | - | 2.A.1.1.55 |
Gene ID: C37_contig_781_139
Type: CAZyme
Location: 161731 - 163677 (-)
Type: CAZyme
Location: 161731 - 163677 (-)
Gene ID: C37_contig_781_140
Type: CAZyme
Location: 163674 - 164786 (-)
Type: CAZyme
Location: 163674 - 164786 (-)
Gene ID: C37_contig_781_141
Type: sulfatase
Location: 164806 - 166332 (-)
Type: sulfatase
Location: 164806 - 166332 (-)
Gene ID: C37_contig_781_142
Type: sulfatase
Location: 166345 - 168099 (-)
Type: sulfatase
Location: 166345 - 168099 (-)
Gene ID: C37_contig_781_143
Type: CAZyme
Location: 168112 - 169695 (-)
Type: CAZyme
Location: 168112 - 169695 (-)
Gene ID: C37_contig_781_144
Type: CAZyme
Location: 169708 - 171696 (-)
Type: CAZyme
Location: 169708 - 171696 (-)
Gene ID: C37_contig_781_145
Type: CAZyme
Location: 171996 - 173651 (-)
Type: CAZyme
Location: 171996 - 173651 (-)
Gene ID: C37_contig_781_146
Type: sulfatase
Location: 173664 - 174377 (-)
Type: sulfatase
Location: 173664 - 174377 (-)
Gene ID: C37_contig_781_147
Type: CAZyme
Location: 174390 - 177143 (-)
Type: CAZyme
Location: 174390 - 177143 (-)
Gene ID: C37_contig_781_148
Type: pfam
Location: 177179 - 178051 (-)
Type: pfam
Location: 177179 - 178051 (-)
Gene ID: C37_contig_781_149
Type: CAZyme
Location: 178147 - 181320 (-)
Type: CAZyme
Location: 178147 - 181320 (-)
Gene ID: C37_contig_781_150
Type:
Location: 181407 - 182492 (-)
Type:
Location: 181407 - 182492 (-)
Gene ID: C37_contig_781_151
Type: pfam
Location: 182509 - 184248 (-)
Type: pfam
Location: 182509 - 184248 (-)
Gene ID: C37_contig_781_152
Type: TC
Location: 184261 - 187419 (-)
Type: TC
Location: 184261 - 187419 (-)
Gene ID: C37_contig_781_153
Type: pfam
Location: 187573 - 189378 (-)
Type: pfam
Location: 187573 - 189378 (-)
Gene ID: C37_contig_781_154
Type: CAZyme
Location: 189569 - 192370 (-)
Type: CAZyme
Location: 189569 - 192370 (-)
Gene ID: C37_contig_781_155
Type: STP
Location: 192580 - 195921 (-)
Type: STP
Location: 192580 - 195921 (-)
Gene ID: C37_contig_781_156
Type: TC
Location: 195933 - 197318 (-)
Type: TC
Location: 195933 - 197318 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Coprobacteraceae
Genus
Coprobacter
Species
Coprobacter fastidiosus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.