Cluster: C37.bin_1_CGC11
🧬 Cluster Details
- Gene Count: 25
- CAZyme Count: 14
- Substrate:
- Genome ID: C37.bin_1
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C37_contig_781 | C37_contig_781_383 | 501661 | 503970 | + | GH36 |
| CAZyme | C37_contig_781 | C37_contig_781_384 | 504107 | 506197 | + | GH36 |
| TC | C37_contig_781 | C37_contig_781_385 | 506474 | 509251 | - | 1.C.105.2.12 |
| CAZyme | C37_contig_781 | C37_contig_781_386 | 509304 | 511787 | - | GH95 |
| CAZyme | C37_contig_781 | C37_contig_781_387 | 511784 | 514600 | - | GH2 |
| CAZyme | C37_contig_781 | C37_contig_781_388 | 514606 | 516603 | - | GH43_24 |
| NULL(UNKNOWN) | C37_contig_781 | C37_contig_781_389 | 516628 | 519366 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | C37_contig_781 | C37_contig_781_390 | 519390 | 520640 | - | 2.A.1.7.1 |
| CAZyme | C37_contig_781 | C37_contig_781_391 | 520648 | 522150 | - | GH29 |
| pfam | C37_contig_781 | C37_contig_781_392 | 522167 | 522553 | - | rhaM |
| CAZyme | C37_contig_781 | C37_contig_781_393 | 522845 | 524824 | - | GH20 |
| NULL(UNKNOWN) | C37_contig_781 | C37_contig_781_394 | 524867 | 525112 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | C37_contig_781 | C37_contig_781_395 | 525142 | 526392 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | C37_contig_781 | C37_contig_781_396 | 526569 | 529220 | - | GH2 |
| CAZyme | C37_contig_781 | C37_contig_781_397 | 529210 | 531444 | - | GH36 |
| CAZyme | C37_contig_781 | C37_contig_781_398 | 531449 | 534085 | - | PL15 |
| CAZyme | C37_contig_781 | C37_contig_781_399 | 534097 | 536448 | - | GH89 |
| sulfatase | C37_contig_781 | C37_contig_781_400 | 536473 | 537489 | - | S1_16 |
| pfam | C37_contig_781 | C37_contig_781_401 | 537505 | 538431 | - | Amidohydro_2 |
| TC | C37_contig_781 | C37_contig_781_402 | 538443 | 539375 | - | 8.A.5.1.6 |
| sulfatase | C37_contig_781 | C37_contig_781_403 | 539431 | 541032 | - | S1_27 |
| TC | C37_contig_781 | C37_contig_781_404 | 541059 | 544202 | - | 1.B.14.6.1 |
| CAZyme | C37_contig_781 | C37_contig_781_405 | 544856 | 547192 | + | GH139 |
| CAZyme | C37_contig_781 | C37_contig_781_406 | 547264 | 550095 | + | PL15 |
| CAZyme | C37_contig_781 | C37_contig_781_407 | 550137 | 552971 | + | PL15 |
Gene ID: C37_contig_781_383
Type: CAZyme
Location: 501661 - 503970 (+)
Type: CAZyme
Location: 501661 - 503970 (+)
Gene ID: C37_contig_781_384
Type: CAZyme
Location: 504107 - 506197 (+)
Type: CAZyme
Location: 504107 - 506197 (+)
Gene ID: C37_contig_781_385
Type: TC
Location: 506474 - 509251 (-)
Type: TC
Location: 506474 - 509251 (-)
Gene ID: C37_contig_781_386
Type: CAZyme
Location: 509304 - 511787 (-)
Type: CAZyme
Location: 509304 - 511787 (-)
Gene ID: C37_contig_781_387
Type: CAZyme
Location: 511784 - 514600 (-)
Type: CAZyme
Location: 511784 - 514600 (-)
Gene ID: C37_contig_781_388
Type: CAZyme
Location: 514606 - 516603 (-)
Type: CAZyme
Location: 514606 - 516603 (-)
Gene ID: C37_contig_781_389
Type:
Location: 516628 - 519366 (-)
Type:
Location: 516628 - 519366 (-)
Gene ID: C37_contig_781_390
Type: TC
Location: 519390 - 520640 (-)
Type: TC
Location: 519390 - 520640 (-)
Gene ID: C37_contig_781_391
Type: CAZyme
Location: 520648 - 522150 (-)
Type: CAZyme
Location: 520648 - 522150 (-)
Gene ID: C37_contig_781_392
Type: pfam
Location: 522167 - 522553 (-)
Type: pfam
Location: 522167 - 522553 (-)
Gene ID: C37_contig_781_393
Type: CAZyme
Location: 522845 - 524824 (-)
Type: CAZyme
Location: 522845 - 524824 (-)
Gene ID: C37_contig_781_394
Type:
Location: 524867 - 525112 (-)
Type:
Location: 524867 - 525112 (-)
Gene ID: C37_contig_781_395
Type:
Location: 525142 - 526392 (-)
Type:
Location: 525142 - 526392 (-)
Gene ID: C37_contig_781_396
Type: CAZyme
Location: 526569 - 529220 (-)
Type: CAZyme
Location: 526569 - 529220 (-)
Gene ID: C37_contig_781_397
Type: CAZyme
Location: 529210 - 531444 (-)
Type: CAZyme
Location: 529210 - 531444 (-)
Gene ID: C37_contig_781_398
Type: CAZyme
Location: 531449 - 534085 (-)
Type: CAZyme
Location: 531449 - 534085 (-)
Gene ID: C37_contig_781_399
Type: CAZyme
Location: 534097 - 536448 (-)
Type: CAZyme
Location: 534097 - 536448 (-)
Gene ID: C37_contig_781_400
Type: sulfatase
Location: 536473 - 537489 (-)
Type: sulfatase
Location: 536473 - 537489 (-)
Gene ID: C37_contig_781_401
Type: pfam
Location: 537505 - 538431 (-)
Type: pfam
Location: 537505 - 538431 (-)
Gene ID: C37_contig_781_402
Type: TC
Location: 538443 - 539375 (-)
Type: TC
Location: 538443 - 539375 (-)
Gene ID: C37_contig_781_403
Type: sulfatase
Location: 539431 - 541032 (-)
Type: sulfatase
Location: 539431 - 541032 (-)
Gene ID: C37_contig_781_404
Type: TC
Location: 541059 - 544202 (-)
Type: TC
Location: 541059 - 544202 (-)
Gene ID: C37_contig_781_405
Type: CAZyme
Location: 544856 - 547192 (+)
Type: CAZyme
Location: 544856 - 547192 (+)
Gene ID: C37_contig_781_406
Type: CAZyme
Location: 547264 - 550095 (+)
Type: CAZyme
Location: 547264 - 550095 (+)
Gene ID: C37_contig_781_407
Type: CAZyme
Location: 550137 - 552971 (+)
Type: CAZyme
Location: 550137 - 552971 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Coprobacteraceae
Genus
Coprobacter
Species
Coprobacter fastidiosus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.