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Cluster: C34.bin_4_CGC39

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme C34_contig_2004 C34_contig_2004_872 1053262 1054317 + GH179
STP C34_contig_2004 C34_contig_2004_873 1054550 1055143 + TetR_N
TC C34_contig_2004 C34_contig_2004_874 1055467 1056432 + 3.A.1.5.39
TC C34_contig_2004 C34_contig_2004_875 1056447 1057286 + 3.A.1.5.20
TC C34_contig_2004 C34_contig_2004_876 1057286 1057486 + 3.A.1.5.41
TC C34_contig_2004 C34_contig_2004_877 1057489 1058241 + 3.A.1.5.13
TC C34_contig_2004 C34_contig_2004_878 1058246 1059244 + 3.A.1.5.15
TC C34_contig_2004 C34_contig_2004_879 1059442 1061025 + 3.A.1.5.39
peptidase C34_contig_2004 C34_contig_2004_880 1061115 1062473 + M14.UPA
peptidase C34_contig_2004 C34_contig_2004_881 1062588 1063361 + S33.UNW
CAZyme C34_contig_2004 C34_contig_2004_882 1063631 1066492 + GH2
peptidase C34_contig_2004 C34_contig_2004_883 1066659 1068029 - C82.001
pfam C34_contig_2004 C34_contig_2004_884 1068475 1070043 + Metallophos | Pur_ac_phosph_N
TC C34_contig_2004 C34_contig_2004_885 1070145 1071308 + 9.B.141.1.2
NULL(UNKNOWN) C34_contig_2004 C34_contig_2004_886 1071475 1072236 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme C34_contig_2004 C34_contig_2004_887 1072648 1074633 + GH120
NULL(UNKNOWN) C34_contig_2004 C34_contig_2004_888 1074836 1075165 + NULL(UNKNOWN)
[View Structural Homologs]
pfam C34_contig_2004 C34_contig_2004_889 1075654 1077201 + PCMT | Ubie_methyltran | Ubie_methyltran | GidB | Methyltransf_29 | TehB | MTS | MTS | PrmA | PrmA | Methyltransf_9 | Methyltransf_11 | Methyltransf_11 | Methyltransf_12 | Methyltransf_12 | Methyltransf_23 | Methyltransf_23 | Methyltransf_25 | Methyltransf_25 | Methyltransf_31 | Methyltransf_31
TC C34_contig_2004 C34_contig_2004_890 1077198 1078172 + 3.A.1.5.3
TC C34_contig_2004 C34_contig_2004_891 1078156 1079001 + 3.A.1.5.11
TC C34_contig_2004 C34_contig_2004_892 1079016 1080581 + 3.A.1.5.20
TC C34_contig_2004 C34_contig_2004_893 1080578 1081516 + 3.A.1.5.12
TC C34_contig_2004 C34_contig_2004_894 1081602 1082354 + 3.A.1.5.12
TC C34_contig_2004 C34_contig_2004_895 1082460 1083842 + 2.A.66.1.33
STP C34_contig_2004 C34_contig_2004_896 1083851 1084378 + Peripla_BP_1
NULL(UNKNOWN) C34_contig_2004 C34_contig_2004_897 1084332 1085216 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme C34_contig_2004 C34_contig_2004_898 1085695 1087974 + GH35
Gene ID: C34_contig_2004_872
Type: CAZyme
Location: 1053262 - 1054317 (+)
Gene ID: C34_contig_2004_873
Type: STP
Location: 1054550 - 1055143 (+)
Gene ID: C34_contig_2004_874
Type: TC
Location: 1055467 - 1056432 (+)
Gene ID: C34_contig_2004_875
Type: TC
Location: 1056447 - 1057286 (+)
Gene ID: C34_contig_2004_876
Type: TC
Location: 1057286 - 1057486 (+)
Gene ID: C34_contig_2004_877
Type: TC
Location: 1057489 - 1058241 (+)
Gene ID: C34_contig_2004_878
Type: TC
Location: 1058246 - 1059244 (+)
Gene ID: C34_contig_2004_879
Type: TC
Location: 1059442 - 1061025 (+)
Gene ID: C34_contig_2004_880
Type: peptidase
Location: 1061115 - 1062473 (+)
Gene ID: C34_contig_2004_881
Type: peptidase
Location: 1062588 - 1063361 (+)
Gene ID: C34_contig_2004_882
Type: CAZyme
Location: 1063631 - 1066492 (+)
Gene ID: C34_contig_2004_883
Type: peptidase
Location: 1066659 - 1068029 (-)
Gene ID: C34_contig_2004_884
Type: pfam
Location: 1068475 - 1070043 (+)
Gene ID: C34_contig_2004_885
Type: TC
Location: 1070145 - 1071308 (+)
Gene ID: C34_contig_2004_886
Type:
Location: 1071475 - 1072236 (+)
Gene ID: C34_contig_2004_887
Type: CAZyme
Location: 1072648 - 1074633 (+)
Gene ID: C34_contig_2004_888
Type:
Location: 1074836 - 1075165 (+)
Gene ID: C34_contig_2004_889
Type: pfam
Location: 1075654 - 1077201 (+)
Gene ID: C34_contig_2004_890
Type: TC
Location: 1077198 - 1078172 (+)
Gene ID: C34_contig_2004_891
Type: TC
Location: 1078156 - 1079001 (+)
Gene ID: C34_contig_2004_892
Type: TC
Location: 1079016 - 1080581 (+)
Gene ID: C34_contig_2004_893
Type: TC
Location: 1080578 - 1081516 (+)
Gene ID: C34_contig_2004_894
Type: TC
Location: 1081602 - 1082354 (+)
Gene ID: C34_contig_2004_895
Type: TC
Location: 1082460 - 1083842 (+)
Gene ID: C34_contig_2004_896
Type: STP
Location: 1083851 - 1084378 (+)
Gene ID: C34_contig_2004_897
Type:
Location: 1084332 - 1085216 (+)
Gene ID: C34_contig_2004_898
Type: CAZyme
Location: 1085695 - 1087974 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
C34_contig_2004_872 vegetarian > omnivore 1.40058 0.01372
C34_contig_2004_887 vegan > omnivore 1.20767 0.03651

🧭 Explore Read Mapping of CGC

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