Cluster: C34.bin_4_CGC31
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 5
- Substrate:
- Genome ID: C34.bin_4
- CGC Family ID: CGCFAM_00009
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C34_contig_2004 | C34_contig_2004_296 | 367908 | 368720 | + | 3.A.1.104.1 |
| TC | C34_contig_2004 | C34_contig_2004_297 | 368865 | 370148 | + | 3.A.1.103.6 |
| pfam | C34_contig_2004 | C34_contig_2004_298 | 370769 | 371596 | + | OrfB_IS605 | HTH_OrfB_IS605 |
| pfam | C34_contig_2004 | C34_contig_2004_299 | 372001 | 374181 | + | Methyltransf_11 | Methyltransf_12 | Methyltransf_23 | Methyltransf_25 | Methyltransf_31 |
| CAZyme | C34_contig_2004 | C34_contig_2004_300 | 374178 | 376424 | + | GT2 |
| CAZyme | C34_contig_2004 | C34_contig_2004_301 | 376576 | 379026 | + | GT2 | GT2 |
| NULL(UNKNOWN) | C34_contig_2004 | C34_contig_2004_302 | 379039 | 380607 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| STP | C34_contig_2004 | C34_contig_2004_303 | 380758 | 381891 | + | Aminotran_1_2 |
| CAZyme | C34_contig_2004 | C34_contig_2004_304 | 381894 | 383708 | + | GT2 | GT2 |
| CAZyme | C34_contig_2004 | C34_contig_2004_305 | 383715 | 384674 | + | GT2 |
| TC | C34_contig_2004 | C34_contig_2004_306 | 384717 | 386117 | + | 9.B.18.1.1 |
| pfam | C34_contig_2004 | C34_contig_2004_307 | 386176 | 387654 | + | LytR_cpsA_psr |
| CAZyme | C34_contig_2004 | C34_contig_2004_308 | 387685 | 388719 | + | GT2 |
Gene ID: C34_contig_2004_296
Type: TC
Location: 367908 - 368720 (+)
Type: TC
Location: 367908 - 368720 (+)
Gene ID: C34_contig_2004_297
Type: TC
Location: 368865 - 370148 (+)
Type: TC
Location: 368865 - 370148 (+)
Gene ID: C34_contig_2004_298
Type: pfam
Location: 370769 - 371596 (+)
Type: pfam
Location: 370769 - 371596 (+)
Gene ID: C34_contig_2004_299
Type: pfam
Location: 372001 - 374181 (+)
Type: pfam
Location: 372001 - 374181 (+)
Gene ID: C34_contig_2004_300
Type: CAZyme
Location: 374178 - 376424 (+)
Type: CAZyme
Location: 374178 - 376424 (+)
Gene ID: C34_contig_2004_301
Type: CAZyme
Location: 376576 - 379026 (+)
Type: CAZyme
Location: 376576 - 379026 (+)
Gene ID: C34_contig_2004_302
Type:
Location: 379039 - 380607 (+)
Type:
Location: 379039 - 380607 (+)
Gene ID: C34_contig_2004_303
Type: STP
Location: 380758 - 381891 (+)
Type: STP
Location: 380758 - 381891 (+)
Gene ID: C34_contig_2004_304
Type: CAZyme
Location: 381894 - 383708 (+)
Type: CAZyme
Location: 381894 - 383708 (+)
Gene ID: C34_contig_2004_305
Type: CAZyme
Location: 383715 - 384674 (+)
Type: CAZyme
Location: 383715 - 384674 (+)
Gene ID: C34_contig_2004_306
Type: TC
Location: 384717 - 386117 (+)
Type: TC
Location: 384717 - 386117 (+)
Gene ID: C34_contig_2004_307
Type: pfam
Location: 386176 - 387654 (+)
Type: pfam
Location: 386176 - 387654 (+)
Gene ID: C34_contig_2004_308
Type: CAZyme
Location: 387685 - 388719 (+)
Type: CAZyme
Location: 387685 - 388719 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Choladousia
Species
Choladousia sp902363665
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C34_contig_2004_302 | vegetarian > omnivore | 1.18439 | 0.01372 |
| C34_contig_2004_308 | vegetarian > vegan | 1.10646 | 0.00450 |