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Cluster: C19.bin_2_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC C19_contig_1097 C19_contig_1097_245 258096 259397 + 2.A.66.1.37
TF C19_contig_1097 C19_contig_1097_246 259445 260290 - HTH_AraC
TC C19_contig_1097 C19_contig_1097_247 260418 261533 + 3.A.1.1.26
pfam C19_contig_1097 C19_contig_1097_248 261649 261945 + ABM
TC C19_contig_1097 C19_contig_1097_249 262018 262884 - 3.A.1.1.48
TC C19_contig_1097 C19_contig_1097_250 262884 263861 - 3.A.1.1.4
NULL(UNKNOWN) C19_contig_1097 C19_contig_1097_251 263974 265413 - NULL(UNKNOWN)
[View Structural Homologs]
TF C19_contig_1097 C19_contig_1097_252 265498 266508 - LacI
CAZyme C19_contig_1097 C19_contig_1097_253 266932 269367 + GH94
TC C19_contig_1097 C19_contig_1097_254 269451 270227 - 3.A.1.3.25
TC C19_contig_1097 C19_contig_1097_255 270217 270981 - 3.A.1.3.20
TC C19_contig_1097 C19_contig_1097_256 271090 271926 - 3.A.1.3.27
NULL(UNKNOWN) C19_contig_1097 C19_contig_1097_257 272301 272918 + NULL(UNKNOWN)
[View Structural Homologs]
pfam C19_contig_1097 C19_contig_1097_258 272969 273427 - ThrE | ThrE_2
TC C19_contig_1097 C19_contig_1097_259 273424 274218 - 2.A.79.1.5
TC C19_contig_1097 C19_contig_1097_260 274353 276257 - 9.B.74.1.4
Gene ID: C19_contig_1097_245
Type: TC
Location: 258096 - 259397 (+)
Gene ID: C19_contig_1097_246
Type: TF
Location: 259445 - 260290 (-)
Gene ID: C19_contig_1097_247
Type: TC
Location: 260418 - 261533 (+)
Gene ID: C19_contig_1097_248
Type: pfam
Location: 261649 - 261945 (+)
Gene ID: C19_contig_1097_249
Type: TC
Location: 262018 - 262884 (-)
Gene ID: C19_contig_1097_250
Type: TC
Location: 262884 - 263861 (-)
Gene ID: C19_contig_1097_251
Type:
Location: 263974 - 265413 (-)
Gene ID: C19_contig_1097_252
Type: TF
Location: 265498 - 266508 (-)
Gene ID: C19_contig_1097_253
Type: CAZyme
Location: 266932 - 269367 (+)
Gene ID: C19_contig_1097_254
Type: TC
Location: 269451 - 270227 (-)
Gene ID: C19_contig_1097_255
Type: TC
Location: 270217 - 270981 (-)
Gene ID: C19_contig_1097_256
Type: TC
Location: 271090 - 271926 (-)
Gene ID: C19_contig_1097_257
Type:
Location: 272301 - 272918 (+)
Gene ID: C19_contig_1097_258
Type: pfam
Location: 272969 - 273427 (-)
Gene ID: C19_contig_1097_259
Type: TC
Location: 273424 - 274218 (-)
Gene ID: C19_contig_1097_260
Type: TC
Location: 274353 - 276257 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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