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Cluster: C19.bin_2_CGC31

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme C19_contig_698 C19_contig_698_1652 1787926 1789119 + CE15
STP C19_contig_698 C19_contig_698_1653 1789227 1790630 + SBP_bac_1
TC C19_contig_698 C19_contig_698_1654 1790760 1792607 + 8.A.59.2.1
TF C19_contig_698 C19_contig_698_1655 1792582 1794150 + HTH_AraC | HTH_AraC
TC C19_contig_698 C19_contig_698_1656 1794287 1795213 + 3.A.1.1.42
TC C19_contig_698 C19_contig_698_1657 1795227 1796117 + 3.A.1.1.39
Gene ID: C19_contig_698_1652
Type: CAZyme
Location: 1787926 - 1789119 (+)
Gene ID: C19_contig_698_1653
Type: STP
Location: 1789227 - 1790630 (+)
Gene ID: C19_contig_698_1654
Type: TC
Location: 1790760 - 1792607 (+)
Gene ID: C19_contig_698_1655
Type: TF
Location: 1792582 - 1794150 (+)
Gene ID: C19_contig_698_1656
Type: TC
Location: 1794287 - 1795213 (+)
Gene ID: C19_contig_698_1657
Type: TC
Location: 1795227 - 1796117 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
C19_contig_698_1652 vegan > omnivore 4.66313 0.00290
C19_contig_698_1652 vegetarian > omnivore 4.93397 0.04910
C19_contig_698_1653 vegan > omnivore 3.62212 0.00290
C19_contig_698_1654 vegan > omnivore 4.05436 0.00290
C19_contig_698_1654 vegetarian > omnivore 4.23493 0.04910
C19_contig_698_1655 vegan > omnivore 5.22429 0.00290
C19_contig_698_1657 vegan > omnivore 2.43041 0.00290

🧭 Explore Read Mapping of CGC

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