Cluster: C19.bin_2_CGC19
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: C19.bin_2
- CGC Family ID: CGCFAM_00063
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C19_contig_698 | C19_contig_698_1180 | 1251525 | 1253027 | - | GH77 |
| pfam | C19_contig_698 | C19_contig_698_1181 | 1253046 | 1253864 | - | Exo_endo_phos |
| TC | C19_contig_698 | C19_contig_698_1182 | 1253871 | 1255553 | - | 4.A.1.1.11 |
| TF | C19_contig_698 | C19_contig_698_1183 | 1255840 | 1256862 | + | LacI |
| TF | C19_contig_698 | C19_contig_698_1184 | 1256921 | 1257778 | - | HTH_AraC | HTH_AraC |
| CAZyme | C19_contig_698 | C19_contig_698_1185 | 1257907 | 1260168 | + | GT35 |
| TC | C19_contig_698 | C19_contig_698_1186 | 1260556 | 1262610 | - | 3.A.3.32.3 |
Gene ID: C19_contig_698_1180
Type: CAZyme
Location: 1251525 - 1253027 (-)
Type: CAZyme
Location: 1251525 - 1253027 (-)
Gene ID: C19_contig_698_1181
Type: pfam
Location: 1253046 - 1253864 (-)
Type: pfam
Location: 1253046 - 1253864 (-)
Gene ID: C19_contig_698_1182
Type: TC
Location: 1253871 - 1255553 (-)
Type: TC
Location: 1253871 - 1255553 (-)
Gene ID: C19_contig_698_1183
Type: TF
Location: 1255840 - 1256862 (+)
Type: TF
Location: 1255840 - 1256862 (+)
Gene ID: C19_contig_698_1184
Type: TF
Location: 1256921 - 1257778 (-)
Type: TF
Location: 1256921 - 1257778 (-)
Gene ID: C19_contig_698_1185
Type: CAZyme
Location: 1257907 - 1260168 (+)
Type: CAZyme
Location: 1257907 - 1260168 (+)
Gene ID: C19_contig_698_1186
Type: TC
Location: 1260556 - 1262610 (-)
Type: TC
Location: 1260556 - 1262610 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Species
Faecalibacterium duncaniae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.