Cluster: C19.bin_2_CGC15
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 2
- Substrate:
- Genome ID: C19.bin_2
- CGC Family ID: CGCFAM_05222
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C19_contig_698 | C19_contig_698_767 | 808217 | 810613 | + | GT35 |
| CAZyme | C19_contig_698 | C19_contig_698_768 | 810892 | 812748 | + | GH13_39 |
| pfam | C19_contig_698 | C19_contig_698_769 | 812932 | 813381 | + | NfeD |
| TC | C19_contig_698 | C19_contig_698_770 | 813398 | 814303 | + | 8.A.21.2.2 |
| pfam | C19_contig_698 | C19_contig_698_771 | 814307 | 814789 | + | DUF386 |
| TF | C19_contig_698 | C19_contig_698_772 | 814904 | 816049 | + | HTH_3 |
| TC | C19_contig_698 | C19_contig_698_773 | 816214 | 817593 | - | 1.A.26.1.3 |
| pfam | C19_contig_698 | C19_contig_698_774 | 817893 | 818543 | - | ABC2_membrane_5 |
| TC | C19_contig_698 | C19_contig_698_775 | 818540 | 819382 | - | 3.A.1.149.1 |
| TF | C19_contig_698 | C19_contig_698_776 | 819386 | 819757 | - | GntR |
| pfam | C19_contig_698 | C19_contig_698_777 | 819901 | 821340 | - | tRNA-synt_2b | HGTP_anticodon | ProRS-C_1 |
| TC | C19_contig_698 | C19_contig_698_778 | 821474 | 821707 | - | 3.D.1.6.3 |
Gene ID: C19_contig_698_767
Type: CAZyme
Location: 808217 - 810613 (+)
Type: CAZyme
Location: 808217 - 810613 (+)
Gene ID: C19_contig_698_768
Type: CAZyme
Location: 810892 - 812748 (+)
Type: CAZyme
Location: 810892 - 812748 (+)
Gene ID: C19_contig_698_769
Type: pfam
Location: 812932 - 813381 (+)
Type: pfam
Location: 812932 - 813381 (+)
Gene ID: C19_contig_698_770
Type: TC
Location: 813398 - 814303 (+)
Type: TC
Location: 813398 - 814303 (+)
Gene ID: C19_contig_698_771
Type: pfam
Location: 814307 - 814789 (+)
Type: pfam
Location: 814307 - 814789 (+)
Gene ID: C19_contig_698_772
Type: TF
Location: 814904 - 816049 (+)
Type: TF
Location: 814904 - 816049 (+)
Gene ID: C19_contig_698_773
Type: TC
Location: 816214 - 817593 (-)
Type: TC
Location: 816214 - 817593 (-)
Gene ID: C19_contig_698_774
Type: pfam
Location: 817893 - 818543 (-)
Type: pfam
Location: 817893 - 818543 (-)
Gene ID: C19_contig_698_775
Type: TC
Location: 818540 - 819382 (-)
Type: TC
Location: 818540 - 819382 (-)
Gene ID: C19_contig_698_776
Type: TF
Location: 819386 - 819757 (-)
Type: TF
Location: 819386 - 819757 (-)
Gene ID: C19_contig_698_777
Type: pfam
Location: 819901 - 821340 (-)
Type: pfam
Location: 819901 - 821340 (-)
Gene ID: C19_contig_698_778
Type: TC
Location: 821474 - 821707 (-)
Type: TC
Location: 821474 - 821707 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Species
Faecalibacterium duncaniae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.