Cluster: C19.CMAG_4_CGC8
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: C19.CMAG_4
- CGC Family ID: CGCFAM_02144
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C19_contig_1058 | C19_contig_1058_1141 | 1206466 | 1207164 | - | 3.A.1.134.3 |
| STP | C19_contig_1058 | C19_contig_1058_1142 | 1207365 | 1207742 | - | HMA |
| CAZyme | C19_contig_1058 | C19_contig_1058_1143 | 1208519 | 1212229 | - | GH13_14 |
| pfam | C19_contig_1058 | C19_contig_1058_1144 | 1212433 | 1213233 | - | ABC2_membrane_6 |
| pfam | C19_contig_1058 | C19_contig_1058_1145 | 1213238 | 1214056 | - | ABC2_membrane_6 |
| TC | C19_contig_1058 | C19_contig_1058_1146 | 1214049 | 1215071 | - | 3.A.1.141.2 |
Gene ID: C19_contig_1058_1141
Type: TC
Location: 1206466 - 1207164 (-)
Type: TC
Location: 1206466 - 1207164 (-)
Gene ID: C19_contig_1058_1142
Type: STP
Location: 1207365 - 1207742 (-)
Type: STP
Location: 1207365 - 1207742 (-)
Gene ID: C19_contig_1058_1143
Type: CAZyme
Location: 1208519 - 1212229 (-)
Type: CAZyme
Location: 1208519 - 1212229 (-)
Gene ID: C19_contig_1058_1144
Type: pfam
Location: 1212433 - 1213233 (-)
Type: pfam
Location: 1212433 - 1213233 (-)
Gene ID: C19_contig_1058_1145
Type: pfam
Location: 1213238 - 1214056 (-)
Type: pfam
Location: 1213238 - 1214056 (-)
Gene ID: C19_contig_1058_1146
Type: TC
Location: 1214049 - 1215071 (-)
Type: TC
Location: 1214049 - 1215071 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Ruminococcus_E
Species
Ruminococcus_E sp003438075
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.