Cluster: C171.bin_2_CGC6
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 5
- Substrate:
- Genome ID: C171.bin_2
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C171_contig_4031 | C171_contig_4031_46 | 52546 | 54108 | + | 3.B.1.1.5 |
| NULL(UNKNOWN) | C171_contig_4031 | C171_contig_4031_47 | 54177 | 54329 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | C171_contig_4031 | C171_contig_4031_48 | 54412 | 54834 | + | Biotin_lipoyl |
| CAZyme | C171_contig_4031 | C171_contig_4031_49 | 54887 | 55855 | + | GH32 |
| CAZyme | C171_contig_4031 | C171_contig_4031_50 | 55913 | 57511 | + | GH20 |
| TC | C171_contig_4031 | C171_contig_4031_51 | 57642 | 59228 | - | 3.A.1.120.5 |
| pfam | C171_contig_4031 | C171_contig_4031_52 | 59523 | 59834 | - | rhaM |
| TC | C171_contig_4031 | C171_contig_4031_53 | 59908 | 60951 | - | 2.A.7.6.1 |
| pfam | C171_contig_4031 | C171_contig_4031_54 | 61044 | 62297 | - | RhaA |
| pfam | C171_contig_4031 | C171_contig_4031_55 | 62370 | 63845 | - | FGGY_N | FGGY_C |
| CAZyme | C171_contig_4031 | C171_contig_4031_56 | 64325 | 66094 | - | GH78 |
| CAZyme | C171_contig_4031 | C171_contig_4031_57 | 66124 | 68409 | - | GH78 |
| pfam | C171_contig_4031 | C171_contig_4031_58 | 68444 | 69430 | + | adh_short | Epimerase | KR | adh_short_C2 |
| pfam | C171_contig_4031 | C171_contig_4031_59 | 69481 | 70656 | + | AP_endonuc_2 | UxuA |
| CAZyme | C171_contig_4031 | C171_contig_4031_60 | 70725 | 71474 | + | CE4 |
Gene ID: C171_contig_4031_46
Type: TC
Location: 52546 - 54108 (+)
Type: TC
Location: 52546 - 54108 (+)
Gene ID: C171_contig_4031_47
Type:
Location: 54177 - 54329 (+)
Type:
Location: 54177 - 54329 (+)
Gene ID: C171_contig_4031_48
Type: pfam
Location: 54412 - 54834 (+)
Type: pfam
Location: 54412 - 54834 (+)
Gene ID: C171_contig_4031_49
Type: CAZyme
Location: 54887 - 55855 (+)
Type: CAZyme
Location: 54887 - 55855 (+)
Gene ID: C171_contig_4031_50
Type: CAZyme
Location: 55913 - 57511 (+)
Type: CAZyme
Location: 55913 - 57511 (+)
Gene ID: C171_contig_4031_51
Type: TC
Location: 57642 - 59228 (-)
Type: TC
Location: 57642 - 59228 (-)
Gene ID: C171_contig_4031_52
Type: pfam
Location: 59523 - 59834 (-)
Type: pfam
Location: 59523 - 59834 (-)
Gene ID: C171_contig_4031_53
Type: TC
Location: 59908 - 60951 (-)
Type: TC
Location: 59908 - 60951 (-)
Gene ID: C171_contig_4031_54
Type: pfam
Location: 61044 - 62297 (-)
Type: pfam
Location: 61044 - 62297 (-)
Gene ID: C171_contig_4031_55
Type: pfam
Location: 62370 - 63845 (-)
Type: pfam
Location: 62370 - 63845 (-)
Gene ID: C171_contig_4031_56
Type: CAZyme
Location: 64325 - 66094 (-)
Type: CAZyme
Location: 64325 - 66094 (-)
Gene ID: C171_contig_4031_57
Type: CAZyme
Location: 66124 - 68409 (-)
Type: CAZyme
Location: 66124 - 68409 (-)
Gene ID: C171_contig_4031_58
Type: pfam
Location: 68444 - 69430 (+)
Type: pfam
Location: 68444 - 69430 (+)
Gene ID: C171_contig_4031_59
Type: pfam
Location: 69481 - 70656 (+)
Type: pfam
Location: 69481 - 70656 (+)
Gene ID: C171_contig_4031_60
Type: CAZyme
Location: 70725 - 71474 (+)
Type: CAZyme
Location: 70725 - 71474 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A hominis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.