Cluster: C137.bin_11_CGC28
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 4
- Substrate:
- Genome ID: C137.bin_11
- CGC Family ID: CGCFAM_01139
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C137_contig_729_corr_2_np12 | C137_contig_729_corr_2_np12_212 | 221024 | 223546 | - | GH3 |
| TF | C137_contig_729_corr_2_np12 | C137_contig_729_corr_2_np12_213 | 224186 | 225661 | + | HTH_AraC | HTH_AraC |
| TC | C137_contig_729_corr_2_np12 | C137_contig_729_corr_2_np12_214 | 225986 | 227107 | - | 3.A.1.1.16 |
| CAZyme | C137_contig_729_corr_2_np12 | C137_contig_729_corr_2_np12_215 | 227216 | 229105 | - | GH3 |
| TC | C137_contig_729_corr_2_np12 | C137_contig_729_corr_2_np12_216 | 229121 | 230014 | - | 3.A.1.1.24 |
| TC | C137_contig_729_corr_2_np12 | C137_contig_729_corr_2_np12_217 | 230019 | 231050 | - | 3.A.1.1.30 |
| CAZyme | C137_contig_729_corr_2_np12 | C137_contig_729_corr_2_np12_218 | 231177 | 233159 | - | GH3 |
| STP | C137_contig_729_corr_2_np12 | C137_contig_729_corr_2_np12_219 | 233149 | 234516 | - | SBP_bac_1 |
| pfam | C137_contig_729_corr_2_np12 | C137_contig_729_corr_2_np12_220 | 234538 | 235356 | - | CBM9_1 |
| TC | C137_contig_729_corr_2_np12 | C137_contig_729_corr_2_np12_221 | 235626 | 237449 | + | 8.A.59.2.1 |
| pfam | C137_contig_729_corr_2_np12 | C137_contig_729_corr_2_np12_222 | 238490 | 240403 | - | Peptidase_S9 | DLH |
| CAZyme | C137_contig_729_corr_2_np12 | C137_contig_729_corr_2_np12_223 | 240430 | 240996 | - | CE1 |
Gene ID: C137_contig_729_corr_2_np12_212
Type: CAZyme
Location: 221024 - 223546 (-)
Type: CAZyme
Location: 221024 - 223546 (-)
Gene ID: C137_contig_729_corr_2_np12_213
Type: TF
Location: 224186 - 225661 (+)
Type: TF
Location: 224186 - 225661 (+)
Gene ID: C137_contig_729_corr_2_np12_214
Type: TC
Location: 225986 - 227107 (-)
Type: TC
Location: 225986 - 227107 (-)
Gene ID: C137_contig_729_corr_2_np12_215
Type: CAZyme
Location: 227216 - 229105 (-)
Type: CAZyme
Location: 227216 - 229105 (-)
Gene ID: C137_contig_729_corr_2_np12_216
Type: TC
Location: 229121 - 230014 (-)
Type: TC
Location: 229121 - 230014 (-)
Gene ID: C137_contig_729_corr_2_np12_217
Type: TC
Location: 230019 - 231050 (-)
Type: TC
Location: 230019 - 231050 (-)
Gene ID: C137_contig_729_corr_2_np12_218
Type: CAZyme
Location: 231177 - 233159 (-)
Type: CAZyme
Location: 231177 - 233159 (-)
Gene ID: C137_contig_729_corr_2_np12_219
Type: STP
Location: 233149 - 234516 (-)
Type: STP
Location: 233149 - 234516 (-)
Gene ID: C137_contig_729_corr_2_np12_220
Type: pfam
Location: 234538 - 235356 (-)
Type: pfam
Location: 234538 - 235356 (-)
Gene ID: C137_contig_729_corr_2_np12_221
Type: TC
Location: 235626 - 237449 (+)
Type: TC
Location: 235626 - 237449 (+)
Gene ID: C137_contig_729_corr_2_np12_222
Type: pfam
Location: 238490 - 240403 (-)
Type: pfam
Location: 238490 - 240403 (-)
Gene ID: C137_contig_729_corr_2_np12_223
Type: CAZyme
Location: 240430 - 240996 (-)
Type: CAZyme
Location: 240430 - 240996 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Aristaeellaceae
Genus
Limiplasma
Species
Limiplasma merdipullorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C137_contig_729_corr_2_np12_220 | vegetarian > vegan | 1.05763 | 0.02955 |