Cluster: C137.bin_11_CGC1
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: C137.bin_11
- CGC Family ID: CGCFAM_02455
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C137_contig_1610 | C137_contig_1610_31 | 27969 | 29309 | - | 2.A.39.1.1 |
| pfam | C137_contig_1610 | C137_contig_1610_32 | 29468 | 31057 | - | PucR | HTH_30 |
| TF | C137_contig_1610 | C137_contig_1610_33 | 31319 | 32341 | + | LacI |
| CAZyme | C137_contig_1610 | C137_contig_1610_34 | 32543 | 34234 | + | GH66 |
| TC | C137_contig_1610 | C137_contig_1610_35 | 34271 | 35473 | + | 3.A.1.1.33 |
| TC | C137_contig_1610 | C137_contig_1610_36 | 35563 | 36519 | + | 3.A.1.1.34 |
| TC | C137_contig_1610 | C137_contig_1610_37 | 36516 | 37361 | + | 3.A.1.1.36 |
Gene ID: C137_contig_1610_31
Type: TC
Location: 27969 - 29309 (-)
Type: TC
Location: 27969 - 29309 (-)
Gene ID: C137_contig_1610_32
Type: pfam
Location: 29468 - 31057 (-)
Type: pfam
Location: 29468 - 31057 (-)
Gene ID: C137_contig_1610_33
Type: TF
Location: 31319 - 32341 (+)
Type: TF
Location: 31319 - 32341 (+)
Gene ID: C137_contig_1610_34
Type: CAZyme
Location: 32543 - 34234 (+)
Type: CAZyme
Location: 32543 - 34234 (+)
Gene ID: C137_contig_1610_35
Type: TC
Location: 34271 - 35473 (+)
Type: TC
Location: 34271 - 35473 (+)
Gene ID: C137_contig_1610_36
Type: TC
Location: 35563 - 36519 (+)
Type: TC
Location: 35563 - 36519 (+)
Gene ID: C137_contig_1610_37
Type: TC
Location: 36516 - 37361 (+)
Type: TC
Location: 36516 - 37361 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Aristaeellaceae
Genus
Limiplasma
Species
Limiplasma merdipullorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C137_contig_1610_35 | vegetarian > vegan | 1.75566 | 0.00701 |
| C137_contig_1610_36 | vegetarian > vegan | 2.80080 | 0.00701 |
| C137_contig_1610_37 | vegetarian > vegan | 1.69916 | 0.00701 |