Cluster: C134.bin_6_CGC69
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 4
- Substrate: xylan
- Genome ID: C134.bin_6
- CGC Family ID: CGCFAM_01804
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C134_contig_431 | C134_contig_431_3467 | 4234367 | 4235158 | + | GH16_3 |
| TC | C134_contig_431 | C134_contig_431_3468 | 4235441 | 4236979 | + | 2.A.2.3.4 |
| CAZyme | C134_contig_431 | C134_contig_431_3469 | 4237019 | 4238140 | + | GH10 |
| CAZyme | C134_contig_431 | C134_contig_431_3470 | 4238153 | 4239124 | + | GH43_1 |
| CAZyme | C134_contig_431 | C134_contig_431_3471 | 4239387 | 4241210 | + | CBM91 | GH43_12 |
| TC | C134_contig_431 | C134_contig_431_3472 | 4241252 | 4244323 | + | 1.B.14.6.1 |
Gene ID: C134_contig_431_3467
Type: CAZyme
Location: 4234367 - 4235158 (+)
Type: CAZyme
Location: 4234367 - 4235158 (+)
Gene ID: C134_contig_431_3468
Type: TC
Location: 4235441 - 4236979 (+)
Type: TC
Location: 4235441 - 4236979 (+)
Gene ID: C134_contig_431_3469
Type: CAZyme
Location: 4237019 - 4238140 (+)
Type: CAZyme
Location: 4237019 - 4238140 (+)
Gene ID: C134_contig_431_3470
Type: CAZyme
Location: 4238153 - 4239124 (+)
Type: CAZyme
Location: 4238153 - 4239124 (+)
Gene ID: C134_contig_431_3471
Type: CAZyme
Location: 4239387 - 4241210 (+)
Type: CAZyme
Location: 4239387 - 4241210 (+)
Gene ID: C134_contig_431_3472
Type: TC
Location: 4241252 - 4244323 (+)
Type: TC
Location: 4241252 - 4244323 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola vulgatus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.