Cluster: C134.bin_6_CGC64
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 5
- Substrate: pectin
- Genome ID: C134.bin_6
- CGC Family ID: CGCFAM_01809
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C134_contig_431 | C134_contig_431_3338 | 4045032 | 4046165 | - | GH105 |
| CAZyme | C134_contig_431 | C134_contig_431_3339 | 4046306 | 4049593 | - | GH106 | GH28 |
| CAZyme | C134_contig_431 | C134_contig_431_3340 | 4049707 | 4051560 | - | PL11 |
| CAZyme | C134_contig_431 | C134_contig_431_3341 | 4051576 | 4052859 | - | CE15 |
| CAZyme | C134_contig_431 | C134_contig_431_3342 | 4052902 | 4054683 | - | GH78 |
| NULL(UNKNOWN) | C134_contig_431 | C134_contig_431_3343 | 4054927 | 4055244 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | C134_contig_431 | C134_contig_431_3344 | 4055334 | 4057472 | - | SusD_RagB | SusD-like_3 |
| TC | C134_contig_431 | C134_contig_431_3345 | 4057504 | 4060656 | - | 1.B.14.6.1 |
| pfam | C134_contig_431 | C134_contig_431_3346 | 4060765 | 4061670 | - | DDE_Tnp_1 | DDE_Tnp_1_3 |
| pfam | C134_contig_431 | C134_contig_431_3347 | 4062063 | 4063244 | - | Phage_int_SAM_5 | Arm-DNA-bind_5 |
| TC | C134_contig_431 | C134_contig_431_3348 | 4063533 | 4066826 | + | 1.B.14.6.1 |
Gene ID: C134_contig_431_3338
Type: CAZyme
Location: 4045032 - 4046165 (-)
Type: CAZyme
Location: 4045032 - 4046165 (-)
Gene ID: C134_contig_431_3339
Type: CAZyme
Location: 4046306 - 4049593 (-)
Type: CAZyme
Location: 4046306 - 4049593 (-)
Gene ID: C134_contig_431_3340
Type: CAZyme
Location: 4049707 - 4051560 (-)
Type: CAZyme
Location: 4049707 - 4051560 (-)
Gene ID: C134_contig_431_3341
Type: CAZyme
Location: 4051576 - 4052859 (-)
Type: CAZyme
Location: 4051576 - 4052859 (-)
Gene ID: C134_contig_431_3342
Type: CAZyme
Location: 4052902 - 4054683 (-)
Type: CAZyme
Location: 4052902 - 4054683 (-)
Gene ID: C134_contig_431_3343
Type:
Location: 4054927 - 4055244 (-)
Type:
Location: 4054927 - 4055244 (-)
Gene ID: C134_contig_431_3344
Type: pfam
Location: 4055334 - 4057472 (-)
Type: pfam
Location: 4055334 - 4057472 (-)
Gene ID: C134_contig_431_3345
Type: TC
Location: 4057504 - 4060656 (-)
Type: TC
Location: 4057504 - 4060656 (-)
Gene ID: C134_contig_431_3346
Type: pfam
Location: 4060765 - 4061670 (-)
Type: pfam
Location: 4060765 - 4061670 (-)
Gene ID: C134_contig_431_3347
Type: pfam
Location: 4062063 - 4063244 (-)
Type: pfam
Location: 4062063 - 4063244 (-)
Gene ID: C134_contig_431_3348
Type: TC
Location: 4063533 - 4066826 (+)
Type: TC
Location: 4063533 - 4066826 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola vulgatus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.