Cluster: C134.bin_6_CGC63
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 3
- Substrate:
- Genome ID: C134.bin_6
- CGC Family ID: CGCFAM_00320
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C134_contig_431 | C134_contig_431_3288 | 3980367 | 3981011 | + | 2.A.95.1.4 |
| sulfatase | C134_contig_431 | C134_contig_431_3289 | 3981084 | 3982103 | - | S1_16 |
| TC | C134_contig_431 | C134_contig_431_3290 | 3982126 | 3983385 | - | 2.A.1.7.1 |
| pfam | C134_contig_431 | C134_contig_431_3291 | 3983412 | 3984338 | - | Amidohydro_2 |
| TC | C134_contig_431 | C134_contig_431_3292 | 3984353 | 3985285 | - | 8.A.5.1.6 |
| TF | C134_contig_431 | C134_contig_431_3293 | 3985403 | 3986263 | - | HTH_AraC | HTH_AraC |
| CAZyme | C134_contig_431 | C134_contig_431_3294 | 3986505 | 3988151 | + | GH29 |
| TC | C134_contig_431 | C134_contig_431_3295 | 3988242 | 3991313 | + | 1.B.14.6.2 |
| TC | C134_contig_431 | C134_contig_431_3296 | 3991339 | 3993027 | + | 8.A.46.1.5 |
| pfam | C134_contig_431 | C134_contig_431_3297 | 3993050 | 3993433 | + | rhaM |
| CAZyme | C134_contig_431 | C134_contig_431_3298 | 3993505 | 3995388 | + | GH97 |
| CAZyme | C134_contig_431 | C134_contig_431_3299 | 3995563 | 3997953 | + | GH31_4 |
Gene ID: C134_contig_431_3288
Type: TC
Location: 3980367 - 3981011 (+)
Type: TC
Location: 3980367 - 3981011 (+)
Gene ID: C134_contig_431_3289
Type: sulfatase
Location: 3981084 - 3982103 (-)
Type: sulfatase
Location: 3981084 - 3982103 (-)
Gene ID: C134_contig_431_3290
Type: TC
Location: 3982126 - 3983385 (-)
Type: TC
Location: 3982126 - 3983385 (-)
Gene ID: C134_contig_431_3291
Type: pfam
Location: 3983412 - 3984338 (-)
Type: pfam
Location: 3983412 - 3984338 (-)
Gene ID: C134_contig_431_3292
Type: TC
Location: 3984353 - 3985285 (-)
Type: TC
Location: 3984353 - 3985285 (-)
Gene ID: C134_contig_431_3293
Type: TF
Location: 3985403 - 3986263 (-)
Type: TF
Location: 3985403 - 3986263 (-)
Gene ID: C134_contig_431_3294
Type: CAZyme
Location: 3986505 - 3988151 (+)
Type: CAZyme
Location: 3986505 - 3988151 (+)
Gene ID: C134_contig_431_3295
Type: TC
Location: 3988242 - 3991313 (+)
Type: TC
Location: 3988242 - 3991313 (+)
Gene ID: C134_contig_431_3296
Type: TC
Location: 3991339 - 3993027 (+)
Type: TC
Location: 3991339 - 3993027 (+)
Gene ID: C134_contig_431_3297
Type: pfam
Location: 3993050 - 3993433 (+)
Type: pfam
Location: 3993050 - 3993433 (+)
Gene ID: C134_contig_431_3298
Type: CAZyme
Location: 3993505 - 3995388 (+)
Type: CAZyme
Location: 3993505 - 3995388 (+)
Gene ID: C134_contig_431_3299
Type: CAZyme
Location: 3995563 - 3997953 (+)
Type: CAZyme
Location: 3995563 - 3997953 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola vulgatus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.