Cluster: C134.bin_6_CGC54
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 6
- Substrate:
- Genome ID: C134.bin_6
- CGC Family ID: CGCFAM_01268
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C134_contig_431 | C134_contig_431_2907 | 3433631 | 3435853 | + | GH92 |
| TF | C134_contig_431 | C134_contig_431_2908 | 3436058 | 3436633 | + | GerE |
| STP | C134_contig_431 | C134_contig_431_2909 | 3436662 | 3437654 | + | FecR |
| CAZyme | C134_contig_431 | C134_contig_431_2910 | 3437672 | 3439954 | + | GH92 |
| CAZyme | C134_contig_431 | C134_contig_431_2911 | 3439984 | 3442296 | + | GH92 |
| NULL(UNKNOWN) | C134_contig_431 | C134_contig_431_2912 | 3442307 | 3442489 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | C134_contig_431 | C134_contig_431_2913 | 3442585 | 3445986 | + | 1.B.14.6.2 |
| TC | C134_contig_431 | C134_contig_431_2914 | 3446010 | 3447779 | + | 8.A.46.2.2 |
| pfam | C134_contig_431 | C134_contig_431_2915 | 3447823 | 3448668 | + | Exo_endo_phos |
| CAZyme | C134_contig_431 | C134_contig_431_2916 | 3448856 | 3450871 | + | GH97 |
| pfam | C134_contig_431 | C134_contig_431_2917 | 3450995 | 3452293 | + | MFS_1 |
| CAZyme | C134_contig_431 | C134_contig_431_2918 | 3452326 | 3453327 | + | GH130_2 |
| CAZyme | C134_contig_431 | C134_contig_431_2919 | 3453786 | 3455027 | + | GH109 |
Gene ID: C134_contig_431_2907
Type: CAZyme
Location: 3433631 - 3435853 (+)
Type: CAZyme
Location: 3433631 - 3435853 (+)
Gene ID: C134_contig_431_2908
Type: TF
Location: 3436058 - 3436633 (+)
Type: TF
Location: 3436058 - 3436633 (+)
Gene ID: C134_contig_431_2909
Type: STP
Location: 3436662 - 3437654 (+)
Type: STP
Location: 3436662 - 3437654 (+)
Gene ID: C134_contig_431_2910
Type: CAZyme
Location: 3437672 - 3439954 (+)
Type: CAZyme
Location: 3437672 - 3439954 (+)
Gene ID: C134_contig_431_2911
Type: CAZyme
Location: 3439984 - 3442296 (+)
Type: CAZyme
Location: 3439984 - 3442296 (+)
Gene ID: C134_contig_431_2912
Type:
Location: 3442307 - 3442489 (+)
Type:
Location: 3442307 - 3442489 (+)
Gene ID: C134_contig_431_2913
Type: TC
Location: 3442585 - 3445986 (+)
Type: TC
Location: 3442585 - 3445986 (+)
Gene ID: C134_contig_431_2914
Type: TC
Location: 3446010 - 3447779 (+)
Type: TC
Location: 3446010 - 3447779 (+)
Gene ID: C134_contig_431_2915
Type: pfam
Location: 3447823 - 3448668 (+)
Type: pfam
Location: 3447823 - 3448668 (+)
Gene ID: C134_contig_431_2916
Type: CAZyme
Location: 3448856 - 3450871 (+)
Type: CAZyme
Location: 3448856 - 3450871 (+)
Gene ID: C134_contig_431_2917
Type: pfam
Location: 3450995 - 3452293 (+)
Type: pfam
Location: 3450995 - 3452293 (+)
Gene ID: C134_contig_431_2918
Type: CAZyme
Location: 3452326 - 3453327 (+)
Type: CAZyme
Location: 3452326 - 3453327 (+)
Gene ID: C134_contig_431_2919
Type: CAZyme
Location: 3453786 - 3455027 (+)
Type: CAZyme
Location: 3453786 - 3455027 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola vulgatus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.