Cluster: C134.bin_6_CGC53
🧬 Cluster Details
- Gene Count: 22
- CAZyme Count: 9
- Substrate:
- Genome ID: C134.bin_6
- CGC Family ID: CGCFAM_03628
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C134_contig_431 | C134_contig_431_2874 | 3377113 | 3378348 | + | GH92 |
| CAZyme | C134_contig_431 | C134_contig_431_2875 | 3378523 | 3380925 | + | GH95 |
| TC | C134_contig_431 | C134_contig_431_2876 | 3381120 | 3382505 | + | 2.A.1.1.55 |
| pfam | C134_contig_431 | C134_contig_431_2877 | 3382518 | 3385859 | + | TPR_8 | DUF5107 |
| CAZyme | C134_contig_431 | C134_contig_431_2878 | 3385856 | 3387841 | + | GH97 |
| TF | C134_contig_431 | C134_contig_431_2879 | 3387925 | 3391962 | + | HTH_AraC |
| CAZyme | C134_contig_431 | C134_contig_431_2880 | 3392166 | 3394193 | + | GH36 |
| TC | C134_contig_431 | C134_contig_431_2881 | 3394233 | 3397286 | + | 1.B.14.6.1 |
| pfam | C134_contig_431 | C134_contig_431_2882 | 3397332 | 3398951 | + | SusD_RagB | SusD-like_3 |
| sulfatase | C134_contig_431 | C134_contig_431_2883 | 3399041 | 3400063 | + | S1_22 |
| CAZyme | C134_contig_431 | C134_contig_431_2884 | 3400093 | 3403035 | + | CBM32 | GH2 |
| CAZyme | C134_contig_431 | C134_contig_431_2885 | 3403047 | 3405326 | + | GH3 |
| CAZyme | C134_contig_431 | C134_contig_431_2886 | 3405329 | 3407389 | + | CE20 | CE20 |
| TF | C134_contig_431 | C134_contig_431_2887 | 3407402 | 3408298 | - | HTH_AraC | HTH_AraC |
| CAZyme | C134_contig_431 | C134_contig_431_2888 | 3408486 | 3410642 | + | GH36 |
| TF | C134_contig_431 | C134_contig_431_2889 | 3411538 | 3412128 | + | GerE |
| STP | C134_contig_431 | C134_contig_431_2890 | 3412189 | 3413187 | + | FecR |
| TC | C134_contig_431 | C134_contig_431_2891 | 3413345 | 3416641 | + | 1.B.14.6.1 |
| TC | C134_contig_431 | C134_contig_431_2892 | 3416672 | 3418114 | + | 8.A.46.1.5 |
| peptidase | C134_contig_431 | C134_contig_431_2893 | 3418147 | 3419184 | + | S09.UPC |
| NULL(UNKNOWN) | C134_contig_431 | C134_contig_431_2894 | 3419418 | 3420497 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | C134_contig_431 | C134_contig_431_2895 | 3421527 | 3423134 | + | GH27 |
Gene ID: C134_contig_431_2874
Type: CAZyme
Location: 3377113 - 3378348 (+)
Type: CAZyme
Location: 3377113 - 3378348 (+)
Gene ID: C134_contig_431_2875
Type: CAZyme
Location: 3378523 - 3380925 (+)
Type: CAZyme
Location: 3378523 - 3380925 (+)
Gene ID: C134_contig_431_2876
Type: TC
Location: 3381120 - 3382505 (+)
Type: TC
Location: 3381120 - 3382505 (+)
Gene ID: C134_contig_431_2877
Type: pfam
Location: 3382518 - 3385859 (+)
Type: pfam
Location: 3382518 - 3385859 (+)
Gene ID: C134_contig_431_2878
Type: CAZyme
Location: 3385856 - 3387841 (+)
Type: CAZyme
Location: 3385856 - 3387841 (+)
Gene ID: C134_contig_431_2879
Type: TF
Location: 3387925 - 3391962 (+)
Type: TF
Location: 3387925 - 3391962 (+)
Gene ID: C134_contig_431_2880
Type: CAZyme
Location: 3392166 - 3394193 (+)
Type: CAZyme
Location: 3392166 - 3394193 (+)
Gene ID: C134_contig_431_2881
Type: TC
Location: 3394233 - 3397286 (+)
Type: TC
Location: 3394233 - 3397286 (+)
Gene ID: C134_contig_431_2882
Type: pfam
Location: 3397332 - 3398951 (+)
Type: pfam
Location: 3397332 - 3398951 (+)
Gene ID: C134_contig_431_2883
Type: sulfatase
Location: 3399041 - 3400063 (+)
Type: sulfatase
Location: 3399041 - 3400063 (+)
Gene ID: C134_contig_431_2884
Type: CAZyme
Location: 3400093 - 3403035 (+)
Type: CAZyme
Location: 3400093 - 3403035 (+)
Gene ID: C134_contig_431_2885
Type: CAZyme
Location: 3403047 - 3405326 (+)
Type: CAZyme
Location: 3403047 - 3405326 (+)
Gene ID: C134_contig_431_2886
Type: CAZyme
Location: 3405329 - 3407389 (+)
Type: CAZyme
Location: 3405329 - 3407389 (+)
Gene ID: C134_contig_431_2887
Type: TF
Location: 3407402 - 3408298 (-)
Type: TF
Location: 3407402 - 3408298 (-)
Gene ID: C134_contig_431_2888
Type: CAZyme
Location: 3408486 - 3410642 (+)
Type: CAZyme
Location: 3408486 - 3410642 (+)
Gene ID: C134_contig_431_2889
Type: TF
Location: 3411538 - 3412128 (+)
Type: TF
Location: 3411538 - 3412128 (+)
Gene ID: C134_contig_431_2890
Type: STP
Location: 3412189 - 3413187 (+)
Type: STP
Location: 3412189 - 3413187 (+)
Gene ID: C134_contig_431_2891
Type: TC
Location: 3413345 - 3416641 (+)
Type: TC
Location: 3413345 - 3416641 (+)
Gene ID: C134_contig_431_2892
Type: TC
Location: 3416672 - 3418114 (+)
Type: TC
Location: 3416672 - 3418114 (+)
Gene ID: C134_contig_431_2893
Type: peptidase
Location: 3418147 - 3419184 (+)
Type: peptidase
Location: 3418147 - 3419184 (+)
Gene ID: C134_contig_431_2894
Type:
Location: 3419418 - 3420497 (+)
Type:
Location: 3419418 - 3420497 (+)
Gene ID: C134_contig_431_2895
Type: CAZyme
Location: 3421527 - 3423134 (+)
Type: CAZyme
Location: 3421527 - 3423134 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola vulgatus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C134_contig_431_2888 | vegan > omnivore | 1.07316 | 0.04156 |