Cluster: C134.bin_6_CGC46
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 8
- Substrate:
- Genome ID: C134.bin_6
- CGC Family ID: CGCFAM_00940
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C134_contig_431 | C134_contig_431_2614 | 3056249 | 3057973 | - | GT83 |
| pfam | C134_contig_431 | C134_contig_431_2615 | 3058060 | 3058434 | + | GtrA_DPMS_TM |
| CAZyme | C134_contig_431 | C134_contig_431_2616 | 3058453 | 3059418 | + | GT2 |
| pfam | C134_contig_431 | C134_contig_431_2617 | 3059449 | 3061476 | - | Sulfatase |
| CAZyme | C134_contig_431 | C134_contig_431_2618 | 3061660 | 3062643 | - | GT2 |
| CAZyme | C134_contig_431 | C134_contig_431_2619 | 3062889 | 3064205 | + | GT4 |
| TC | C134_contig_431 | C134_contig_431_2620 | 3064263 | 3066101 | + | 3.A.1.106.1 |
| CAZyme | C134_contig_431 | C134_contig_431_2621 | 3066121 | 3067035 | + | GT2 |
| TC | C134_contig_431 | C134_contig_431_2622 | 3067745 | 3069202 | + | 1.C.39.13.2 |
| TC | C134_contig_431 | C134_contig_431_2623 | 3069324 | 3070799 | + | 1.C.39.13.2 |
| NULL(UNKNOWN) | C134_contig_431 | C134_contig_431_2624 | 3070812 | 3070973 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | C134_contig_431 | C134_contig_431_2625 | 3071079 | 3072437 | - | DUF772 | DDE_Tnp_1_2 |
| CAZyme | C134_contig_431 | C134_contig_431_2626 | 3072684 | 3073634 | - | GT8 |
| CAZyme | C134_contig_431 | C134_contig_431_2627 | 3073639 | 3074544 | - | GT2 |
| CAZyme | C134_contig_431 | C134_contig_431_2628 | 3074772 | 3075671 | - | GT2 |
Gene ID: C134_contig_431_2614
Type: CAZyme
Location: 3056249 - 3057973 (-)
Type: CAZyme
Location: 3056249 - 3057973 (-)
Gene ID: C134_contig_431_2615
Type: pfam
Location: 3058060 - 3058434 (+)
Type: pfam
Location: 3058060 - 3058434 (+)
Gene ID: C134_contig_431_2616
Type: CAZyme
Location: 3058453 - 3059418 (+)
Type: CAZyme
Location: 3058453 - 3059418 (+)
Gene ID: C134_contig_431_2617
Type: pfam
Location: 3059449 - 3061476 (-)
Type: pfam
Location: 3059449 - 3061476 (-)
Gene ID: C134_contig_431_2618
Type: CAZyme
Location: 3061660 - 3062643 (-)
Type: CAZyme
Location: 3061660 - 3062643 (-)
Gene ID: C134_contig_431_2619
Type: CAZyme
Location: 3062889 - 3064205 (+)
Type: CAZyme
Location: 3062889 - 3064205 (+)
Gene ID: C134_contig_431_2620
Type: TC
Location: 3064263 - 3066101 (+)
Type: TC
Location: 3064263 - 3066101 (+)
Gene ID: C134_contig_431_2621
Type: CAZyme
Location: 3066121 - 3067035 (+)
Type: CAZyme
Location: 3066121 - 3067035 (+)
Gene ID: C134_contig_431_2622
Type: TC
Location: 3067745 - 3069202 (+)
Type: TC
Location: 3067745 - 3069202 (+)
Gene ID: C134_contig_431_2623
Type: TC
Location: 3069324 - 3070799 (+)
Type: TC
Location: 3069324 - 3070799 (+)
Gene ID: C134_contig_431_2624
Type:
Location: 3070812 - 3070973 (-)
Type:
Location: 3070812 - 3070973 (-)
Gene ID: C134_contig_431_2625
Type: pfam
Location: 3071079 - 3072437 (-)
Type: pfam
Location: 3071079 - 3072437 (-)
Gene ID: C134_contig_431_2626
Type: CAZyme
Location: 3072684 - 3073634 (-)
Type: CAZyme
Location: 3072684 - 3073634 (-)
Gene ID: C134_contig_431_2627
Type: CAZyme
Location: 3073639 - 3074544 (-)
Type: CAZyme
Location: 3073639 - 3074544 (-)
Gene ID: C134_contig_431_2628
Type: CAZyme
Location: 3074772 - 3075671 (-)
Type: CAZyme
Location: 3074772 - 3075671 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola vulgatus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.