Cluster: C134.bin_6_CGC44
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: C134.bin_6
- CGC Family ID: CGCFAM_01256
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C134_contig_431 | C134_contig_431_2556 | 2972083 | 2974212 | - | GH146 |
| TC | C134_contig_431 | C134_contig_431_2557 | 2974352 | 2975971 | - | 8.A.46.1.1 |
| TC | C134_contig_431 | C134_contig_431_2558 | 2975998 | 2979042 | - | 1.B.14.6.1 |
| CAZyme | C134_contig_431 | C134_contig_431_2559 | 2979077 | 2981512 | - | GH127 |
| pfam | C134_contig_431 | C134_contig_431_2560 | 2981891 | 2982502 | + | Resolvase |
| pfam | C134_contig_431 | C134_contig_431_2561 | 2983343 | 2983924 | - | PDDEXK_9 |
| TC | C134_contig_431 | C134_contig_431_2562 | 2984390 | 2987419 | + | 1.B.14.6.1 |
Gene ID: C134_contig_431_2556
Type: CAZyme
Location: 2972083 - 2974212 (-)
Type: CAZyme
Location: 2972083 - 2974212 (-)
Gene ID: C134_contig_431_2557
Type: TC
Location: 2974352 - 2975971 (-)
Type: TC
Location: 2974352 - 2975971 (-)
Gene ID: C134_contig_431_2558
Type: TC
Location: 2975998 - 2979042 (-)
Type: TC
Location: 2975998 - 2979042 (-)
Gene ID: C134_contig_431_2559
Type: CAZyme
Location: 2979077 - 2981512 (-)
Type: CAZyme
Location: 2979077 - 2981512 (-)
Gene ID: C134_contig_431_2560
Type: pfam
Location: 2981891 - 2982502 (+)
Type: pfam
Location: 2981891 - 2982502 (+)
Gene ID: C134_contig_431_2561
Type: pfam
Location: 2983343 - 2983924 (-)
Type: pfam
Location: 2983343 - 2983924 (-)
Gene ID: C134_contig_431_2562
Type: TC
Location: 2984390 - 2987419 (+)
Type: TC
Location: 2984390 - 2987419 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola vulgatus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.