Cluster: C134.bin_6_CGC35
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 3
- Substrate:
- Genome ID: C134.bin_6
- CGC Family ID: CGCFAM_03627
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C134_contig_431 | C134_contig_431_1986 | 2324499 | 2325953 | + | 2.A.38.1.3 |
| NULL(UNKNOWN) | C134_contig_431 | C134_contig_431_1987 | 2326056 | 2326433 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | C134_contig_431 | C134_contig_431_1988 | 2326537 | 2326887 | + | 3.D.1.8.1 |
| TC | C134_contig_431 | C134_contig_431_1989 | 2326878 | 2327474 | + | 3.D.1.6.1 |
| TC | C134_contig_431 | C134_contig_431_1990 | 2327471 | 2329030 | + | 3.D.1.5.1 |
| TC | C134_contig_431 | C134_contig_431_1991 | 2329154 | 2330230 | + | 3.D.1.5.1 |
| TC | C134_contig_431 | C134_contig_431_1992 | 2330230 | 2330682 | + | 3.D.1.1.1 |
| TC | C134_contig_431 | C134_contig_431_1993 | 2330698 | 2331201 | + | 3.D.9.1.1 |
| TC | C134_contig_431 | C134_contig_431_1994 | 2331207 | 2331515 | + | 3.D.1.2.1 |
| TC | C134_contig_431 | C134_contig_431_1995 | 2331518 | 2333419 | + | 3.D.9.1.1 |
| TC | C134_contig_431 | C134_contig_431_1996 | 2333473 | 2334954 | + | 3.D.1.2.1 |
| TC | C134_contig_431 | C134_contig_431_1997 | 2334985 | 2336406 | + | 3.D.1.8.1 |
| CAZyme | C134_contig_431 | C134_contig_431_1998 | 2336582 | 2337808 | + | GH88 |
| STP | C134_contig_431 | C134_contig_431_1999 | 2337810 | 2338052 | - | HATPase_c |
| CAZyme | C134_contig_431 | C134_contig_431_2000 | 2338487 | 2339893 | + | GH28 |
| TC | C134_contig_431 | C134_contig_431_2001 | 2339957 | 2341207 | - | 9.B.10.1.1 |
| CAZyme | C134_contig_431 | C134_contig_431_2002 | 2341356 | 2342681 | + | GH29 |
Gene ID: C134_contig_431_1986
Type: TC
Location: 2324499 - 2325953 (+)
Type: TC
Location: 2324499 - 2325953 (+)
Gene ID: C134_contig_431_1987
Type:
Location: 2326056 - 2326433 (+)
Type:
Location: 2326056 - 2326433 (+)
Gene ID: C134_contig_431_1988
Type: TC
Location: 2326537 - 2326887 (+)
Type: TC
Location: 2326537 - 2326887 (+)
Gene ID: C134_contig_431_1989
Type: TC
Location: 2326878 - 2327474 (+)
Type: TC
Location: 2326878 - 2327474 (+)
Gene ID: C134_contig_431_1990
Type: TC
Location: 2327471 - 2329030 (+)
Type: TC
Location: 2327471 - 2329030 (+)
Gene ID: C134_contig_431_1991
Type: TC
Location: 2329154 - 2330230 (+)
Type: TC
Location: 2329154 - 2330230 (+)
Gene ID: C134_contig_431_1992
Type: TC
Location: 2330230 - 2330682 (+)
Type: TC
Location: 2330230 - 2330682 (+)
Gene ID: C134_contig_431_1993
Type: TC
Location: 2330698 - 2331201 (+)
Type: TC
Location: 2330698 - 2331201 (+)
Gene ID: C134_contig_431_1994
Type: TC
Location: 2331207 - 2331515 (+)
Type: TC
Location: 2331207 - 2331515 (+)
Gene ID: C134_contig_431_1995
Type: TC
Location: 2331518 - 2333419 (+)
Type: TC
Location: 2331518 - 2333419 (+)
Gene ID: C134_contig_431_1996
Type: TC
Location: 2333473 - 2334954 (+)
Type: TC
Location: 2333473 - 2334954 (+)
Gene ID: C134_contig_431_1997
Type: TC
Location: 2334985 - 2336406 (+)
Type: TC
Location: 2334985 - 2336406 (+)
Gene ID: C134_contig_431_1998
Type: CAZyme
Location: 2336582 - 2337808 (+)
Type: CAZyme
Location: 2336582 - 2337808 (+)
Gene ID: C134_contig_431_1999
Type: STP
Location: 2337810 - 2338052 (-)
Type: STP
Location: 2337810 - 2338052 (-)
Gene ID: C134_contig_431_2000
Type: CAZyme
Location: 2338487 - 2339893 (+)
Type: CAZyme
Location: 2338487 - 2339893 (+)
Gene ID: C134_contig_431_2001
Type: TC
Location: 2339957 - 2341207 (-)
Type: TC
Location: 2339957 - 2341207 (-)
Gene ID: C134_contig_431_2002
Type: CAZyme
Location: 2341356 - 2342681 (+)
Type: CAZyme
Location: 2341356 - 2342681 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola vulgatus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.