Cluster: C134.bin_6_CGC33
🧬 Cluster Details
- Gene Count: 38
- CAZyme Count: 18
- Substrate:
- Genome ID: C134.bin_6
- CGC Family ID: CGCFAM_05200
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C134_contig_431 | C134_contig_431_1926 | 2213269 | 2214993 | - | CE12 | CE8 |
| CAZyme | C134_contig_431 | C134_contig_431_1927 | 2215000 | 2216160 | - | CE19 |
| CAZyme | C134_contig_431 | C134_contig_431_1928 | 2216181 | 2217794 | - | PL10_2 |
| pfam | C134_contig_431 | C134_contig_431_1929 | 2217983 | 2218474 | + | Cupin_2 |
| CAZyme | C134_contig_431 | C134_contig_431_1930 | 2218568 | 2220568 | - | CE19 |
| CAZyme | C134_contig_431 | C134_contig_431_1931 | 2220586 | 2222970 | - | GH31_9 |
| CAZyme | C134_contig_431 | C134_contig_431_1932 | 2222984 | 2226352 | - | GH2 |
| NULL(UNKNOWN) | C134_contig_431 | C134_contig_431_1933 | 2226393 | 2228939 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | C134_contig_431 | C134_contig_431_1934 | 2229133 | 2230740 | - | Apiosidase | DUF5060 | DUF5605 |
| CAZyme | C134_contig_431 | C134_contig_431_1935 | 2230778 | 2232277 | - | CBM91 | GH43_9 |
| TC | C134_contig_431 | C134_contig_431_1936 | 2232586 | 2234541 | - | 8.A.46.1.6 |
| TC | C134_contig_431 | C134_contig_431_1937 | 2234557 | 2237721 | - | 1.B.14.6.1 |
| CAZyme | C134_contig_431 | C134_contig_431_1938 | 2237968 | 2240346 | - | GH33 |
| pfam | C134_contig_431 | C134_contig_431_1939 | 2240376 | 2242529 | - | SusD_RagB | SusD-like_3 |
| TC | C134_contig_431 | C134_contig_431_1940 | 2242533 | 2245763 | - | 1.B.14.6.1 |
| CAZyme | C134_contig_431 | C134_contig_431_1941 | 2245981 | 2246931 | - | CE8 |
| CAZyme | C134_contig_431 | C134_contig_431_1942 | 2246946 | 2248175 | - | GH105 |
| TC | C134_contig_431 | C134_contig_431_1943 | 2248465 | 2249856 | + | 4.A.5.1.4 |
| pfam | C134_contig_431 | C134_contig_431_1944 | 2249869 | 2250831 | + | KduI |
| TC | C134_contig_431 | C134_contig_431_1945 | 2251051 | 2252526 | + | 2.A.1.14.1 |
| pfam | C134_contig_431 | C134_contig_431_1946 | 2252579 | 2255920 | - | AAA_11 | AAA_11 | AAA_12 | AAA_19 | AAA_30 |
| NULL(UNKNOWN) | C134_contig_431 | C134_contig_431_1947 | 2255930 | 2256667 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | C134_contig_431 | C134_contig_431_1948 | 2256764 | 2258227 | - | GH140 |
| CAZyme | C134_contig_431 | C134_contig_431_1949 | 2258297 | 2259301 | - | GH43_18 |
| TF | C134_contig_431 | C134_contig_431_1950 | 2259416 | 2263693 | - | HTH_AraC |
| TC | C134_contig_431 | C134_contig_431_1951 | 2263948 | 2267118 | + | 1.B.14.6.1 |
| pfam | C134_contig_431 | C134_contig_431_1952 | 2267142 | 2269142 | + | SusD_RagB | SusD-like_3 |
| CAZyme | C134_contig_431 | C134_contig_431_1953 | 2269181 | 2270614 | + | GH105 |
| pfam | C134_contig_431 | C134_contig_431_1954 | 2270821 | 2272257 | - | Aldedh |
| CAZyme | C134_contig_431 | C134_contig_431_1955 | 2272673 | 2273902 | - | GH154 |
| CAZyme | C134_contig_431 | C134_contig_431_1956 | 2273892 | 2275082 | - | GH88 |
| CAZyme | C134_contig_431 | C134_contig_431_1957 | 2275138 | 2277741 | - | GH2 |
| NULL(UNKNOWN) | C134_contig_431 | C134_contig_431_1958 | 2277871 | 2278116 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | C134_contig_431 | C134_contig_431_1959 | 2278238 | 2281117 | - | HTH_AraC |
| CAZyme | C134_contig_431 | C134_contig_431_1960 | 2281176 | 2283392 | - | GH78 |
| CAZyme | C134_contig_431 | C134_contig_431_1961 | 2283403 | 2285967 | - | GH2 |
| pfam | C134_contig_431 | C134_contig_431_1962 | 2286098 | 2288149 | - | SusD_RagB | SusD-like_3 |
| TC | C134_contig_431 | C134_contig_431_1963 | 2288162 | 2291710 | - | 1.B.14.6.1 |
Gene ID: C134_contig_431_1926
Type: CAZyme
Location: 2213269 - 2214993 (-)
Type: CAZyme
Location: 2213269 - 2214993 (-)
Gene ID: C134_contig_431_1927
Type: CAZyme
Location: 2215000 - 2216160 (-)
Type: CAZyme
Location: 2215000 - 2216160 (-)
Gene ID: C134_contig_431_1928
Type: CAZyme
Location: 2216181 - 2217794 (-)
Type: CAZyme
Location: 2216181 - 2217794 (-)
Gene ID: C134_contig_431_1929
Type: pfam
Location: 2217983 - 2218474 (+)
Type: pfam
Location: 2217983 - 2218474 (+)
Gene ID: C134_contig_431_1930
Type: CAZyme
Location: 2218568 - 2220568 (-)
Type: CAZyme
Location: 2218568 - 2220568 (-)
Gene ID: C134_contig_431_1931
Type: CAZyme
Location: 2220586 - 2222970 (-)
Type: CAZyme
Location: 2220586 - 2222970 (-)
Gene ID: C134_contig_431_1932
Type: CAZyme
Location: 2222984 - 2226352 (-)
Type: CAZyme
Location: 2222984 - 2226352 (-)
Gene ID: C134_contig_431_1933
Type:
Location: 2226393 - 2228939 (-)
Type:
Location: 2226393 - 2228939 (-)
Gene ID: C134_contig_431_1934
Type: pfam
Location: 2229133 - 2230740 (-)
Type: pfam
Location: 2229133 - 2230740 (-)
Gene ID: C134_contig_431_1935
Type: CAZyme
Location: 2230778 - 2232277 (-)
Type: CAZyme
Location: 2230778 - 2232277 (-)
Gene ID: C134_contig_431_1936
Type: TC
Location: 2232586 - 2234541 (-)
Type: TC
Location: 2232586 - 2234541 (-)
Gene ID: C134_contig_431_1937
Type: TC
Location: 2234557 - 2237721 (-)
Type: TC
Location: 2234557 - 2237721 (-)
Gene ID: C134_contig_431_1938
Type: CAZyme
Location: 2237968 - 2240346 (-)
Type: CAZyme
Location: 2237968 - 2240346 (-)
Gene ID: C134_contig_431_1939
Type: pfam
Location: 2240376 - 2242529 (-)
Type: pfam
Location: 2240376 - 2242529 (-)
Gene ID: C134_contig_431_1940
Type: TC
Location: 2242533 - 2245763 (-)
Type: TC
Location: 2242533 - 2245763 (-)
Gene ID: C134_contig_431_1941
Type: CAZyme
Location: 2245981 - 2246931 (-)
Type: CAZyme
Location: 2245981 - 2246931 (-)
Gene ID: C134_contig_431_1942
Type: CAZyme
Location: 2246946 - 2248175 (-)
Type: CAZyme
Location: 2246946 - 2248175 (-)
Gene ID: C134_contig_431_1943
Type: TC
Location: 2248465 - 2249856 (+)
Type: TC
Location: 2248465 - 2249856 (+)
Gene ID: C134_contig_431_1944
Type: pfam
Location: 2249869 - 2250831 (+)
Type: pfam
Location: 2249869 - 2250831 (+)
Gene ID: C134_contig_431_1945
Type: TC
Location: 2251051 - 2252526 (+)
Type: TC
Location: 2251051 - 2252526 (+)
Gene ID: C134_contig_431_1946
Type: pfam
Location: 2252579 - 2255920 (-)
Type: pfam
Location: 2252579 - 2255920 (-)
Gene ID: C134_contig_431_1947
Type:
Location: 2255930 - 2256667 (-)
Type:
Location: 2255930 - 2256667 (-)
Gene ID: C134_contig_431_1948
Type: CAZyme
Location: 2256764 - 2258227 (-)
Type: CAZyme
Location: 2256764 - 2258227 (-)
Gene ID: C134_contig_431_1949
Type: CAZyme
Location: 2258297 - 2259301 (-)
Type: CAZyme
Location: 2258297 - 2259301 (-)
Gene ID: C134_contig_431_1950
Type: TF
Location: 2259416 - 2263693 (-)
Type: TF
Location: 2259416 - 2263693 (-)
Gene ID: C134_contig_431_1951
Type: TC
Location: 2263948 - 2267118 (+)
Type: TC
Location: 2263948 - 2267118 (+)
Gene ID: C134_contig_431_1952
Type: pfam
Location: 2267142 - 2269142 (+)
Type: pfam
Location: 2267142 - 2269142 (+)
Gene ID: C134_contig_431_1953
Type: CAZyme
Location: 2269181 - 2270614 (+)
Type: CAZyme
Location: 2269181 - 2270614 (+)
Gene ID: C134_contig_431_1954
Type: pfam
Location: 2270821 - 2272257 (-)
Type: pfam
Location: 2270821 - 2272257 (-)
Gene ID: C134_contig_431_1955
Type: CAZyme
Location: 2272673 - 2273902 (-)
Type: CAZyme
Location: 2272673 - 2273902 (-)
Gene ID: C134_contig_431_1956
Type: CAZyme
Location: 2273892 - 2275082 (-)
Type: CAZyme
Location: 2273892 - 2275082 (-)
Gene ID: C134_contig_431_1957
Type: CAZyme
Location: 2275138 - 2277741 (-)
Type: CAZyme
Location: 2275138 - 2277741 (-)
Gene ID: C134_contig_431_1958
Type:
Location: 2277871 - 2278116 (-)
Type:
Location: 2277871 - 2278116 (-)
Gene ID: C134_contig_431_1959
Type: TF
Location: 2278238 - 2281117 (-)
Type: TF
Location: 2278238 - 2281117 (-)
Gene ID: C134_contig_431_1960
Type: CAZyme
Location: 2281176 - 2283392 (-)
Type: CAZyme
Location: 2281176 - 2283392 (-)
Gene ID: C134_contig_431_1961
Type: CAZyme
Location: 2283403 - 2285967 (-)
Type: CAZyme
Location: 2283403 - 2285967 (-)
Gene ID: C134_contig_431_1962
Type: pfam
Location: 2286098 - 2288149 (-)
Type: pfam
Location: 2286098 - 2288149 (-)
Gene ID: C134_contig_431_1963
Type: TC
Location: 2288162 - 2291710 (-)
Type: TC
Location: 2288162 - 2291710 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola vulgatus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C134_contig_431_1950 | vegan > omnivore | 1.11572 | 0.04156 |
| C134_contig_431_1950 | vegetarian > omnivore | 3.30275 | 0.04664 |