Cluster: C134.bin_6_CGC29
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: C134.bin_6
- CGC Family ID: CGCFAM_01307
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C134_contig_431 | C134_contig_431_1754 | 1996575 | 1998194 | + | GH28 |
| pfam | C134_contig_431 | C134_contig_431_1755 | 1998333 | 1999547 | + | DUF4861 |
| CAZyme | C134_contig_431 | C134_contig_431_1756 | 1999561 | 2001225 | + | CBM91 | GH43_10 |
| TF | C134_contig_431 | C134_contig_431_1757 | 2001308 | 2001910 | + | GerE |
| STP | C134_contig_431 | C134_contig_431_1758 | 2001977 | 2003137 | + | FecR |
| TC | C134_contig_431 | C134_contig_431_1759 | 2003193 | 2006510 | + | 1.B.14.6.1 |
Gene ID: C134_contig_431_1754
Type: CAZyme
Location: 1996575 - 1998194 (+)
Type: CAZyme
Location: 1996575 - 1998194 (+)
Gene ID: C134_contig_431_1755
Type: pfam
Location: 1998333 - 1999547 (+)
Type: pfam
Location: 1998333 - 1999547 (+)
Gene ID: C134_contig_431_1756
Type: CAZyme
Location: 1999561 - 2001225 (+)
Type: CAZyme
Location: 1999561 - 2001225 (+)
Gene ID: C134_contig_431_1757
Type: TF
Location: 2001308 - 2001910 (+)
Type: TF
Location: 2001308 - 2001910 (+)
Gene ID: C134_contig_431_1758
Type: STP
Location: 2001977 - 2003137 (+)
Type: STP
Location: 2001977 - 2003137 (+)
Gene ID: C134_contig_431_1759
Type: TC
Location: 2003193 - 2006510 (+)
Type: TC
Location: 2003193 - 2006510 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola vulgatus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.