Cluster: C134.bin_6_CGC17
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 7
- Substrate:
- Genome ID: C134.bin_6
- CGC Family ID: CGCFAM_03626
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C134_contig_431 | C134_contig_431_1094 | 1208912 | 1211143 | - | GH139 |
| CAZyme | C134_contig_431 | C134_contig_431_1095 | 1211156 | 1212580 | - | CE20 |
| CAZyme | C134_contig_431 | C134_contig_431_1096 | 1212598 | 1215828 | - | GH106 |
| CAZyme | C134_contig_431 | C134_contig_431_1097 | 1215976 | 1218816 | - | GH2 |
| CAZyme | C134_contig_431 | C134_contig_431_1098 | 1218907 | 1222077 | - | GH2 |
| pfam | C134_contig_431 | C134_contig_431_1099 | 1222207 | 1223706 | - | SusD_RagB | SusD-like_3 |
| TC | C134_contig_431 | C134_contig_431_1100 | 1223732 | 1226806 | - | 1.B.14.6.1 |
| NULL(UNKNOWN) | C134_contig_431 | C134_contig_431_1101 | 1226887 | 1227000 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | C134_contig_431 | C134_contig_431_1102 | 1227018 | 1228463 | - | SusD_RagB | SusD-like_3 |
| TC | C134_contig_431 | C134_contig_431_1103 | 1228485 | 1231604 | - | 1.B.14.6.1 |
| TC | C134_contig_431 | C134_contig_431_1104 | 1231873 | 1233471 | - | 2.A.81.1.2 |
| CAZyme | C134_contig_431 | C134_contig_431_1105 | 1233562 | 1237842 | - | CBM57 | CBM97 | GH137 | GH2 |
| TF | C134_contig_431 | C134_contig_431_1106 | 1237931 | 1238233 | - | HTH_3 |
| pfam | C134_contig_431 | C134_contig_431_1107 | 1238205 | 1238546 | - | Gp49 |
| CAZyme | C134_contig_431 | C134_contig_431_1108 | 1238692 | 1241397 | - | GH138 |
Gene ID: C134_contig_431_1094
Type: CAZyme
Location: 1208912 - 1211143 (-)
Type: CAZyme
Location: 1208912 - 1211143 (-)
Gene ID: C134_contig_431_1095
Type: CAZyme
Location: 1211156 - 1212580 (-)
Type: CAZyme
Location: 1211156 - 1212580 (-)
Gene ID: C134_contig_431_1096
Type: CAZyme
Location: 1212598 - 1215828 (-)
Type: CAZyme
Location: 1212598 - 1215828 (-)
Gene ID: C134_contig_431_1097
Type: CAZyme
Location: 1215976 - 1218816 (-)
Type: CAZyme
Location: 1215976 - 1218816 (-)
Gene ID: C134_contig_431_1098
Type: CAZyme
Location: 1218907 - 1222077 (-)
Type: CAZyme
Location: 1218907 - 1222077 (-)
Gene ID: C134_contig_431_1099
Type: pfam
Location: 1222207 - 1223706 (-)
Type: pfam
Location: 1222207 - 1223706 (-)
Gene ID: C134_contig_431_1100
Type: TC
Location: 1223732 - 1226806 (-)
Type: TC
Location: 1223732 - 1226806 (-)
Gene ID: C134_contig_431_1101
Type:
Location: 1226887 - 1227000 (-)
Type:
Location: 1226887 - 1227000 (-)
Gene ID: C134_contig_431_1102
Type: pfam
Location: 1227018 - 1228463 (-)
Type: pfam
Location: 1227018 - 1228463 (-)
Gene ID: C134_contig_431_1103
Type: TC
Location: 1228485 - 1231604 (-)
Type: TC
Location: 1228485 - 1231604 (-)
Gene ID: C134_contig_431_1104
Type: TC
Location: 1231873 - 1233471 (-)
Type: TC
Location: 1231873 - 1233471 (-)
Gene ID: C134_contig_431_1105
Type: CAZyme
Location: 1233562 - 1237842 (-)
Type: CAZyme
Location: 1233562 - 1237842 (-)
Gene ID: C134_contig_431_1106
Type: TF
Location: 1237931 - 1238233 (-)
Type: TF
Location: 1237931 - 1238233 (-)
Gene ID: C134_contig_431_1107
Type: pfam
Location: 1238205 - 1238546 (-)
Type: pfam
Location: 1238205 - 1238546 (-)
Gene ID: C134_contig_431_1108
Type: CAZyme
Location: 1238692 - 1241397 (-)
Type: CAZyme
Location: 1238692 - 1241397 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola vulgatus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.