Cluster: C130.bin_6_CGC7
🧬 Cluster Details
- Gene Count: 18
- CAZyme Count: 12
- Substrate:
- Genome ID: C130.bin_6
- CGC Family ID: CGCFAM_01275
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C130_contig_81 | C130_contig_81_254 | 262445 | 263347 | - | GT2 |
| CAZyme | C130_contig_81 | C130_contig_81_255 | 263350 | 264318 | - | GT2 |
| CAZyme | C130_contig_81 | C130_contig_81_256 | 264456 | 265400 | - | GT2 |
| CAZyme | C130_contig_81 | C130_contig_81_257 | 265420 | 266364 | - | GT14 |
| pfam | C130_contig_81 | C130_contig_81_258 | 266351 | 267505 | - | Acyl_transf_3 |
| pfam | C130_contig_81 | C130_contig_81_259 | 267697 | 269220 | - | Polysacc_synt |
| CAZyme | C130_contig_81 | C130_contig_81_260 | 269205 | 270212 | - | GT2 |
| pfam | C130_contig_81 | C130_contig_81_261 | 270231 | 271385 | - | PS_pyruv_trans |
| CAZyme | C130_contig_81 | C130_contig_81_262 | 271378 | 272331 | - | GT2 |
| CAZyme | C130_contig_81 | C130_contig_81_263 | 272351 | 273361 | - | GT2 |
| CAZyme | C130_contig_81 | C130_contig_81_264 | 273431 | 274444 | - | GT2 |
| CAZyme | C130_contig_81 | C130_contig_81_265 | 274449 | 275642 | - | GT4 |
| CAZyme | C130_contig_81 | C130_contig_81_266 | 275639 | 276346 | - | GT32 |
| CAZyme | C130_contig_81 | C130_contig_81_267 | 276371 | 277183 | - | GT2 |
| TC | C130_contig_81 | C130_contig_81_268 | 277221 | 278321 | - | 9.B.183.1.9 |
| peptidase | C130_contig_81 | C130_contig_81_269 | 278743 | 281607 | + | M64.UPW |
| CAZyme | C130_contig_81 | C130_contig_81_270 | 281705 | 283417 | - | GT4 |
| TC | C130_contig_81 | C130_contig_81_271 | 283447 | 285318 | - | 9.B.18.2.1 |
Gene ID: C130_contig_81_254
Type: CAZyme
Location: 262445 - 263347 (-)
Type: CAZyme
Location: 262445 - 263347 (-)
Gene ID: C130_contig_81_255
Type: CAZyme
Location: 263350 - 264318 (-)
Type: CAZyme
Location: 263350 - 264318 (-)
Gene ID: C130_contig_81_256
Type: CAZyme
Location: 264456 - 265400 (-)
Type: CAZyme
Location: 264456 - 265400 (-)
Gene ID: C130_contig_81_257
Type: CAZyme
Location: 265420 - 266364 (-)
Type: CAZyme
Location: 265420 - 266364 (-)
Gene ID: C130_contig_81_258
Type: pfam
Location: 266351 - 267505 (-)
Type: pfam
Location: 266351 - 267505 (-)
Gene ID: C130_contig_81_259
Type: pfam
Location: 267697 - 269220 (-)
Type: pfam
Location: 267697 - 269220 (-)
Gene ID: C130_contig_81_260
Type: CAZyme
Location: 269205 - 270212 (-)
Type: CAZyme
Location: 269205 - 270212 (-)
Gene ID: C130_contig_81_261
Type: pfam
Location: 270231 - 271385 (-)
Type: pfam
Location: 270231 - 271385 (-)
Gene ID: C130_contig_81_262
Type: CAZyme
Location: 271378 - 272331 (-)
Type: CAZyme
Location: 271378 - 272331 (-)
Gene ID: C130_contig_81_263
Type: CAZyme
Location: 272351 - 273361 (-)
Type: CAZyme
Location: 272351 - 273361 (-)
Gene ID: C130_contig_81_264
Type: CAZyme
Location: 273431 - 274444 (-)
Type: CAZyme
Location: 273431 - 274444 (-)
Gene ID: C130_contig_81_265
Type: CAZyme
Location: 274449 - 275642 (-)
Type: CAZyme
Location: 274449 - 275642 (-)
Gene ID: C130_contig_81_266
Type: CAZyme
Location: 275639 - 276346 (-)
Type: CAZyme
Location: 275639 - 276346 (-)
Gene ID: C130_contig_81_267
Type: CAZyme
Location: 276371 - 277183 (-)
Type: CAZyme
Location: 276371 - 277183 (-)
Gene ID: C130_contig_81_268
Type: TC
Location: 277221 - 278321 (-)
Type: TC
Location: 277221 - 278321 (-)
Gene ID: C130_contig_81_269
Type: peptidase
Location: 278743 - 281607 (+)
Type: peptidase
Location: 278743 - 281607 (+)
Gene ID: C130_contig_81_270
Type: CAZyme
Location: 281705 - 283417 (-)
Type: CAZyme
Location: 281705 - 283417 (-)
Gene ID: C130_contig_81_271
Type: TC
Location: 283447 - 285318 (-)
Type: TC
Location: 283447 - 285318 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Dorea_A
Species
Dorea_A longicatena
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C130_contig_81_266 | vegan > omnivore | 1.04242 | 0.02539 |