Cluster: C130.bin_6_CGC25
🧬 Cluster Details
- Gene Count: 25
- CAZyme Count: 11
- Substrate:
- Genome ID: C130.bin_6
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C130_contig_81 | C130_contig_81_1261 | 1380319 | 1380585 | + | 8.A.8.1.5 |
| pfam | C130_contig_81 | C130_contig_81_1262 | 1380679 | 1381092 | + | GtrA_DPMS_TM |
| CAZyme | C130_contig_81 | C130_contig_81_1263 | 1381189 | 1381752 | + | GH25 |
| CAZyme | C130_contig_81 | C130_contig_81_1264 | 1381777 | 1383486 | + | GH25 |
| CAZyme | C130_contig_81 | C130_contig_81_1265 | 1383608 | 1386952 | + | GH2 |
| CAZyme | C130_contig_81 | C130_contig_81_1266 | 1387100 | 1389637 | + | GH73 |
| TC | C130_contig_81 | C130_contig_81_1267 | 1389666 | 1392095 | + | 9.B.10.1.1 |
| TF | C130_contig_81 | C130_contig_81_1268 | 1392157 | 1393638 | - | HTH_3 |
| pfam | C130_contig_81 | C130_contig_81_1269 | 1393960 | 1395423 | + | MatE | Polysacc_synt | MurJ | Polysacc_synt_3 |
| CAZyme | C130_contig_81 | C130_contig_81_1270 | 1395454 | 1396332 | + | GT2 |
| pfam | C130_contig_81 | C130_contig_81_1271 | 1396332 | 1397396 | + | 3Beta_HSD | Epimerase | Polysacc_synt_2 | NAD_binding_4 | GDP_Man_Dehyd |
| CAZyme | C130_contig_81 | C130_contig_81_1272 | 1397409 | 1398464 | + | GT2 |
| CAZyme | C130_contig_81 | C130_contig_81_1273 | 1398467 | 1399513 | + | GT2 |
| pfam | C130_contig_81 | C130_contig_81_1274 | 1399530 | 1400249 | + | NTP_transferase | IspD | NTP_transf_3 |
| pfam | C130_contig_81 | C130_contig_81_1275 | 1400277 | 1401422 | - | Glyphos_transf |
| CAZyme | C130_contig_81 | C130_contig_81_1276 | 1401614 | 1402537 | + | GT2 |
| pfam | C130_contig_81 | C130_contig_81_1277 | 1402547 | 1403368 | + | LicD |
| CAZyme | C130_contig_81 | C130_contig_81_1278 | 1403389 | 1404081 | + | GT2 |
| pfam | C130_contig_81 | C130_contig_81_1279 | 1404083 | 1404436 | + | DUF2304 |
| NULL(UNKNOWN) | C130_contig_81 | C130_contig_81_1280 | 1404471 | 1406399 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | C130_contig_81 | C130_contig_81_1281 | 1406483 | 1407259 | + | 3.A.1.103.6 |
| TC | C130_contig_81 | C130_contig_81_1282 | 1407278 | 1408036 | + | 3.A.1.103.1 |
| NULL(UNKNOWN) | C130_contig_81 | C130_contig_81_1283 | 1408054 | 1408689 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | C130_contig_81 | C130_contig_81_1284 | 1408708 | 1409685 | + | GT2 |
| CAZyme | C130_contig_81 | C130_contig_81_1285 | 1409688 | 1410917 | + | GT4 |
Gene ID: C130_contig_81_1261
Type: TC
Location: 1380319 - 1380585 (+)
Type: TC
Location: 1380319 - 1380585 (+)
Gene ID: C130_contig_81_1262
Type: pfam
Location: 1380679 - 1381092 (+)
Type: pfam
Location: 1380679 - 1381092 (+)
Gene ID: C130_contig_81_1263
Type: CAZyme
Location: 1381189 - 1381752 (+)
Type: CAZyme
Location: 1381189 - 1381752 (+)
Gene ID: C130_contig_81_1264
Type: CAZyme
Location: 1381777 - 1383486 (+)
Type: CAZyme
Location: 1381777 - 1383486 (+)
Gene ID: C130_contig_81_1265
Type: CAZyme
Location: 1383608 - 1386952 (+)
Type: CAZyme
Location: 1383608 - 1386952 (+)
Gene ID: C130_contig_81_1266
Type: CAZyme
Location: 1387100 - 1389637 (+)
Type: CAZyme
Location: 1387100 - 1389637 (+)
Gene ID: C130_contig_81_1267
Type: TC
Location: 1389666 - 1392095 (+)
Type: TC
Location: 1389666 - 1392095 (+)
Gene ID: C130_contig_81_1268
Type: TF
Location: 1392157 - 1393638 (-)
Type: TF
Location: 1392157 - 1393638 (-)
Gene ID: C130_contig_81_1269
Type: pfam
Location: 1393960 - 1395423 (+)
Type: pfam
Location: 1393960 - 1395423 (+)
Gene ID: C130_contig_81_1270
Type: CAZyme
Location: 1395454 - 1396332 (+)
Type: CAZyme
Location: 1395454 - 1396332 (+)
Gene ID: C130_contig_81_1271
Type: pfam
Location: 1396332 - 1397396 (+)
Type: pfam
Location: 1396332 - 1397396 (+)
Gene ID: C130_contig_81_1272
Type: CAZyme
Location: 1397409 - 1398464 (+)
Type: CAZyme
Location: 1397409 - 1398464 (+)
Gene ID: C130_contig_81_1273
Type: CAZyme
Location: 1398467 - 1399513 (+)
Type: CAZyme
Location: 1398467 - 1399513 (+)
Gene ID: C130_contig_81_1274
Type: pfam
Location: 1399530 - 1400249 (+)
Type: pfam
Location: 1399530 - 1400249 (+)
Gene ID: C130_contig_81_1275
Type: pfam
Location: 1400277 - 1401422 (-)
Type: pfam
Location: 1400277 - 1401422 (-)
Gene ID: C130_contig_81_1276
Type: CAZyme
Location: 1401614 - 1402537 (+)
Type: CAZyme
Location: 1401614 - 1402537 (+)
Gene ID: C130_contig_81_1277
Type: pfam
Location: 1402547 - 1403368 (+)
Type: pfam
Location: 1402547 - 1403368 (+)
Gene ID: C130_contig_81_1278
Type: CAZyme
Location: 1403389 - 1404081 (+)
Type: CAZyme
Location: 1403389 - 1404081 (+)
Gene ID: C130_contig_81_1279
Type: pfam
Location: 1404083 - 1404436 (+)
Type: pfam
Location: 1404083 - 1404436 (+)
Gene ID: C130_contig_81_1280
Type:
Location: 1404471 - 1406399 (+)
Type:
Location: 1404471 - 1406399 (+)
Gene ID: C130_contig_81_1281
Type: TC
Location: 1406483 - 1407259 (+)
Type: TC
Location: 1406483 - 1407259 (+)
Gene ID: C130_contig_81_1282
Type: TC
Location: 1407278 - 1408036 (+)
Type: TC
Location: 1407278 - 1408036 (+)
Gene ID: C130_contig_81_1283
Type:
Location: 1408054 - 1408689 (+)
Type:
Location: 1408054 - 1408689 (+)
Gene ID: C130_contig_81_1284
Type: CAZyme
Location: 1408708 - 1409685 (+)
Type: CAZyme
Location: 1408708 - 1409685 (+)
Gene ID: C130_contig_81_1285
Type: CAZyme
Location: 1409688 - 1410917 (+)
Type: CAZyme
Location: 1409688 - 1410917 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Dorea_A
Species
Dorea_A longicatena
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.