Cluster: C130.bin_6_CGC1
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: C130.bin_6
- CGC Family ID: CGCFAM_03625
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C130_contig_67 | C130_contig_67_214 | 215173 | 215958 | + | 3.A.1.3.2 |
| TC | C130_contig_67 | C130_contig_67_215 | 215981 | 216670 | + | 3.A.1.3.20 |
| TC | C130_contig_67 | C130_contig_67_216 | 216660 | 217406 | + | 3.A.1.3.25 |
| TF | C130_contig_67 | C130_contig_67_217 | 217524 | 218543 | - | LacI |
| pfam | C130_contig_67 | C130_contig_67_218 | 218869 | 219090 | + | PTS_EIIA_1 |
| CAZyme | C130_contig_67 | C130_contig_67_219 | 219176 | 219904 | + | GH77 |
| CAZyme | C130_contig_67 | C130_contig_67_220 | 220039 | 220713 | + | GH77 |
Gene ID: C130_contig_67_214
Type: TC
Location: 215173 - 215958 (+)
Type: TC
Location: 215173 - 215958 (+)
Gene ID: C130_contig_67_215
Type: TC
Location: 215981 - 216670 (+)
Type: TC
Location: 215981 - 216670 (+)
Gene ID: C130_contig_67_216
Type: TC
Location: 216660 - 217406 (+)
Type: TC
Location: 216660 - 217406 (+)
Gene ID: C130_contig_67_217
Type: TF
Location: 217524 - 218543 (-)
Type: TF
Location: 217524 - 218543 (-)
Gene ID: C130_contig_67_218
Type: pfam
Location: 218869 - 219090 (+)
Type: pfam
Location: 218869 - 219090 (+)
Gene ID: C130_contig_67_219
Type: CAZyme
Location: 219176 - 219904 (+)
Type: CAZyme
Location: 219176 - 219904 (+)
Gene ID: C130_contig_67_220
Type: CAZyme
Location: 220039 - 220713 (+)
Type: CAZyme
Location: 220039 - 220713 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Dorea_A
Species
Dorea_A longicatena
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.