Cluster: C130.CMAG_5_CGC6
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 4
- Substrate:
- Genome ID: C130.CMAG_5
- CGC Family ID: CGCFAM_00006
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C130_contig_589 | C130_contig_589_605 | 701305 | 702054 | + | 9.B.18.1.2 |
| CAZyme | C130_contig_589 | C130_contig_589_606 | 702041 | 702847 | + | GT26 |
| pfam | C130_contig_589 | C130_contig_589_607 | 702840 | 703949 | + | Epimerase_2 |
| CAZyme | C130_contig_589 | C130_contig_589_608 | 703946 | 705055 | + | GT4 |
| pfam | C130_contig_589 | C130_contig_589_609 | 705057 | 705932 | + | LicD |
| NULL(UNKNOWN) | C130_contig_589 | C130_contig_589_610 | 705916 | 706392 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | C130_contig_589 | C130_contig_589_611 | 706420 | 707457 | + | GT2 |
| pfam | C130_contig_589 | C130_contig_589_612 | 707473 | 708168 | + | Hexapep | Hexapep_2 |
| NULL(UNKNOWN) | C130_contig_589 | C130_contig_589_613 | 708608 | 709318 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | C130_contig_589 | C130_contig_589_614 | 709321 | 710322 | + | GT2 |
Gene ID: C130_contig_589_605
Type: TC
Location: 701305 - 702054 (+)
Type: TC
Location: 701305 - 702054 (+)
Gene ID: C130_contig_589_606
Type: CAZyme
Location: 702041 - 702847 (+)
Type: CAZyme
Location: 702041 - 702847 (+)
Gene ID: C130_contig_589_607
Type: pfam
Location: 702840 - 703949 (+)
Type: pfam
Location: 702840 - 703949 (+)
Gene ID: C130_contig_589_608
Type: CAZyme
Location: 703946 - 705055 (+)
Type: CAZyme
Location: 703946 - 705055 (+)
Gene ID: C130_contig_589_609
Type: pfam
Location: 705057 - 705932 (+)
Type: pfam
Location: 705057 - 705932 (+)
Gene ID: C130_contig_589_610
Type:
Location: 705916 - 706392 (+)
Type:
Location: 705916 - 706392 (+)
Gene ID: C130_contig_589_611
Type: CAZyme
Location: 706420 - 707457 (+)
Type: CAZyme
Location: 706420 - 707457 (+)
Gene ID: C130_contig_589_612
Type: pfam
Location: 707473 - 708168 (+)
Type: pfam
Location: 707473 - 708168 (+)
Gene ID: C130_contig_589_613
Type:
Location: 708608 - 709318 (+)
Type:
Location: 708608 - 709318 (+)
Gene ID: C130_contig_589_614
Type: CAZyme
Location: 709321 - 710322 (+)
Type: CAZyme
Location: 709321 - 710322 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp003469205
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.