Cluster: C130.CMAG_5_CGC4
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: C130.CMAG_5
- CGC Family ID: CGCFAM_00182
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C130_contig_589 | C130_contig_589_372 | 423066 | 424508 | + | 3.A.1.8.1 |
| TC | C130_contig_589 | C130_contig_589_373 | 424512 | 425582 | + | 3.A.1.1.3 |
| pfam | C130_contig_589 | C130_contig_589_374 | 426017 | 427300 | + | HGD-D |
| TC | C130_contig_589 | C130_contig_589_375 | 427485 | 429095 | + | 3.A.1.5.11 |
| TC | C130_contig_589 | C130_contig_589_376 | 429184 | 430137 | + | 3.A.1.5.11 |
| TC | C130_contig_589 | C130_contig_589_377 | 430134 | 430964 | + | 3.A.1.5.39 |
| TC | C130_contig_589 | C130_contig_589_378 | 430968 | 431963 | + | 3.A.1.5.37 |
| TC | C130_contig_589 | C130_contig_589_379 | 431953 | 432738 | + | 3.A.1.5.36 |
| pfam | C130_contig_589 | C130_contig_589_380 | 432815 | 433978 | + | HGD-D |
| pfam | C130_contig_589 | C130_contig_589_381 | 434029 | 434793 | + | BcrAD_BadFG |
| CAZyme | C130_contig_589 | C130_contig_589_382 | 434808 | 436025 | + | GT4 |
Gene ID: C130_contig_589_372
Type: TC
Location: 423066 - 424508 (+)
Type: TC
Location: 423066 - 424508 (+)
Gene ID: C130_contig_589_373
Type: TC
Location: 424512 - 425582 (+)
Type: TC
Location: 424512 - 425582 (+)
Gene ID: C130_contig_589_374
Type: pfam
Location: 426017 - 427300 (+)
Type: pfam
Location: 426017 - 427300 (+)
Gene ID: C130_contig_589_375
Type: TC
Location: 427485 - 429095 (+)
Type: TC
Location: 427485 - 429095 (+)
Gene ID: C130_contig_589_376
Type: TC
Location: 429184 - 430137 (+)
Type: TC
Location: 429184 - 430137 (+)
Gene ID: C130_contig_589_377
Type: TC
Location: 430134 - 430964 (+)
Type: TC
Location: 430134 - 430964 (+)
Gene ID: C130_contig_589_378
Type: TC
Location: 430968 - 431963 (+)
Type: TC
Location: 430968 - 431963 (+)
Gene ID: C130_contig_589_379
Type: TC
Location: 431953 - 432738 (+)
Type: TC
Location: 431953 - 432738 (+)
Gene ID: C130_contig_589_380
Type: pfam
Location: 432815 - 433978 (+)
Type: pfam
Location: 432815 - 433978 (+)
Gene ID: C130_contig_589_381
Type: pfam
Location: 434029 - 434793 (+)
Type: pfam
Location: 434029 - 434793 (+)
Gene ID: C130_contig_589_382
Type: CAZyme
Location: 434808 - 436025 (+)
Type: CAZyme
Location: 434808 - 436025 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp003469205
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C130_contig_589_375 | vegan > omnivore | 3.47002 | 0.00701 |
| C130_contig_589_375 | vegetarian > omnivore | 1.23308 | 0.01084 |
| C130_contig_589_376 | vegan > omnivore | 2.96614 | 0.00701 |
| C130_contig_589_376 | vegetarian > omnivore | 1.36258 | 0.01084 |
| C130_contig_589_377 | vegan > omnivore | 3.17120 | 0.00701 |
| C130_contig_589_377 | vegetarian > omnivore | 1.36987 | 0.01084 |
| C130_contig_589_378 | vegan > omnivore | 1.50368 | 0.00701 |
| C130_contig_589_378 | vegetarian > omnivore | 1.04536 | 0.01084 |
| C130_contig_589_379 | vegan > omnivore | 2.99484 | 0.00701 |
| C130_contig_589_379 | vegetarian > omnivore | 1.09253 | 0.01084 |
| C130_contig_589_382 | vegan > omnivore | 1.72589 | 0.00701 |