Cluster: C130.CMAG_5_CGC21
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: C130.CMAG_5
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C130_contig_589 | C130_contig_589_1839 | 2175823 | 2176149 | + | 4.A.3.2.7 |
| TC | C130_contig_589 | C130_contig_589_1840 | 2176196 | 2176489 | + | 4.A.3.2.6 |
| TC | C130_contig_589 | C130_contig_589_1841 | 2176499 | 2177848 | + | 4.A.3.2.6 |
| CAZyme | C130_contig_589 | C130_contig_589_1842 | 2177850 | 2179304 | + | GH1 |
Gene ID: C130_contig_589_1839
Type: TC
Location: 2175823 - 2176149 (+)
Type: TC
Location: 2175823 - 2176149 (+)
Gene ID: C130_contig_589_1840
Type: TC
Location: 2176196 - 2176489 (+)
Type: TC
Location: 2176196 - 2176489 (+)
Gene ID: C130_contig_589_1841
Type: TC
Location: 2176499 - 2177848 (+)
Type: TC
Location: 2176499 - 2177848 (+)
Gene ID: C130_contig_589_1842
Type: CAZyme
Location: 2177850 - 2179304 (+)
Type: CAZyme
Location: 2177850 - 2179304 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp003469205
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C130_contig_589_1839 | vegetarian > vegan | 1.49113 | 0.02999 |
| C130_contig_589_1840 | vegetarian > vegan | 2.22165 | 0.02999 |
| C130_contig_589_1841 | vegetarian > vegan | 1.96840 | 0.02999 |
| C130_contig_589_1842 | vegetarian > vegan | 2.31888 | 0.00969 |