Cluster: C129.CMAG_1_CGC9
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: C129.CMAG_1
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C129_contig_2368 | C129_contig_2368_433 | 450989 | 452044 | + | GT9 |
| pfam | C129_contig_2368 | C129_contig_2368_434 | 452115 | 452459 | - | CMD |
| TF | C129_contig_2368 | C129_contig_2368_435 | 452563 | 453453 | + | HTH_AraC | HTH_AraC |
| TC | C129_contig_2368 | C129_contig_2368_436 | 453530 | 455374 | + | 3.A.1.106.2 |
Gene ID: C129_contig_2368_433
Type: CAZyme
Location: 450989 - 452044 (+)
Type: CAZyme
Location: 450989 - 452044 (+)
Gene ID: C129_contig_2368_434
Type: pfam
Location: 452115 - 452459 (-)
Type: pfam
Location: 452115 - 452459 (-)
Gene ID: C129_contig_2368_435
Type: TF
Location: 452563 - 453453 (+)
Type: TF
Location: 452563 - 453453 (+)
Gene ID: C129_contig_2368_436
Type: TC
Location: 453530 - 455374 (+)
Type: TC
Location: 453530 - 455374 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D parainfluenzae_L
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C129_contig_2368_433 | vegetarian > omnivore | 1.03493 | 0.01522 |
| C129_contig_2368_433 | vegetarian > vegan | 1.06186 | 0.04592 |
| C129_contig_2368_434 | vegan > omnivore | 1.32661 | 0.00918 |
| C129_contig_2368_434 | vegetarian > omnivore | 1.58310 | 0.01522 |
| C129_contig_2368_435 | vegetarian > vegan | 1.09300 | 0.04592 |