Cluster: C129.CMAG_1_CGC7
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: C129.CMAG_1
- CGC Family ID: CGCFAM_01420
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C129_contig_2368 | C129_contig_2368_375 | 391171 | 392106 | - | GT2 |
| peptidase | C129_contig_2368 | C129_contig_2368_376 | 392228 | 393865 | - | C26.964 |
| pfam | C129_contig_2368 | C129_contig_2368_377 | 394124 | 395494 | + | Hexapep | Hexapep | NTP_transferase | IspD | CTP_transf_3 | NTP_transf_3 | Hexapep_2 | Hexapep_2 |
| TC | C129_contig_2368 | C129_contig_2368_378 | 395611 | 396102 | + | 9.B.105.1.1 |
Gene ID: C129_contig_2368_375
Type: CAZyme
Location: 391171 - 392106 (-)
Type: CAZyme
Location: 391171 - 392106 (-)
Gene ID: C129_contig_2368_376
Type: peptidase
Location: 392228 - 393865 (-)
Type: peptidase
Location: 392228 - 393865 (-)
Gene ID: C129_contig_2368_377
Type: pfam
Location: 394124 - 395494 (+)
Type: pfam
Location: 394124 - 395494 (+)
Gene ID: C129_contig_2368_378
Type: TC
Location: 395611 - 396102 (+)
Type: TC
Location: 395611 - 396102 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D parainfluenzae_L
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C129_contig_2368_378 | vegan > omnivore | 1.30478 | 0.00918 |
| C129_contig_2368_378 | vegetarian > omnivore | 1.16275 | 0.01522 |