Cluster: C129.CMAG_1_CGC6
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 1
- Substrate:
- Genome ID: C129.CMAG_1
- CGC Family ID: CGCFAM_03482
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C129_contig_2368 | C129_contig_2368_342 | 347573 | 348367 | - | 1.A.16.2.1 |
| pfam | C129_contig_2368 | C129_contig_2368_343 | 348654 | 349121 | - | SSB |
| pfam | C129_contig_2368 | C129_contig_2368_344 | 349285 | 352116 | + | UvrA_DNA-bind | UvrA_inter |
| TC | C129_contig_2368 | C129_contig_2368_345 | 352173 | 353699 | - | 2.A.1.3.2 |
| TC | C129_contig_2368 | C129_contig_2368_346 | 353708 | 354877 | - | 8.A.1.1.1 |
| TC | C129_contig_2368 | C129_contig_2368_347 | 355280 | 360343 | + | 1.B.40.1.5 |
| pfam | C129_contig_2368 | C129_contig_2368_348 | 360476 | 361615 | + | DUF2827 |
| CAZyme | C129_contig_2368 | C129_contig_2368_349 | 361707 | 363239 | - | GT2 |
| TC | C129_contig_2368 | C129_contig_2368_350 | 363248 | 364435 | - | 2.A.33.1.2 |
| TC | C129_contig_2368 | C129_contig_2368_351 | 364644 | 365945 | + | 2.A.26.1.1 |
Gene ID: C129_contig_2368_342
Type: TC
Location: 347573 - 348367 (-)
Type: TC
Location: 347573 - 348367 (-)
Gene ID: C129_contig_2368_343
Type: pfam
Location: 348654 - 349121 (-)
Type: pfam
Location: 348654 - 349121 (-)
Gene ID: C129_contig_2368_344
Type: pfam
Location: 349285 - 352116 (+)
Type: pfam
Location: 349285 - 352116 (+)
Gene ID: C129_contig_2368_345
Type: TC
Location: 352173 - 353699 (-)
Type: TC
Location: 352173 - 353699 (-)
Gene ID: C129_contig_2368_346
Type: TC
Location: 353708 - 354877 (-)
Type: TC
Location: 353708 - 354877 (-)
Gene ID: C129_contig_2368_347
Type: TC
Location: 355280 - 360343 (+)
Type: TC
Location: 355280 - 360343 (+)
Gene ID: C129_contig_2368_348
Type: pfam
Location: 360476 - 361615 (+)
Type: pfam
Location: 360476 - 361615 (+)
Gene ID: C129_contig_2368_349
Type: CAZyme
Location: 361707 - 363239 (-)
Type: CAZyme
Location: 361707 - 363239 (-)
Gene ID: C129_contig_2368_350
Type: TC
Location: 363248 - 364435 (-)
Type: TC
Location: 363248 - 364435 (-)
Gene ID: C129_contig_2368_351
Type: TC
Location: 364644 - 365945 (+)
Type: TC
Location: 364644 - 365945 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D parainfluenzae_L
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C129_contig_2368_343 | vegan > omnivore | 1.41701 | 0.00918 |
| C129_contig_2368_347 | vegetarian > omnivore | 1.05774 | 0.01522 |
| C129_contig_2368_348 | vegetarian > vegan | 1.00641 | 0.04743 |