Cluster: C129.CMAG_1_CGC3
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: C129.CMAG_1
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C129_contig_2368 | C129_contig_2368_215 | 240655 | 241470 | + | GT2 |
| TC | C129_contig_2368 | C129_contig_2368_216 | 241467 | 242843 | + | 2.A.38.1.1 |
| TC | C129_contig_2368 | C129_contig_2368_217 | 242922 | 243305 | + | 1.A.22.1.1 |
Gene ID: C129_contig_2368_215
Type: CAZyme
Location: 240655 - 241470 (+)
Type: CAZyme
Location: 240655 - 241470 (+)
Gene ID: C129_contig_2368_216
Type: TC
Location: 241467 - 242843 (+)
Type: TC
Location: 241467 - 242843 (+)
Gene ID: C129_contig_2368_217
Type: TC
Location: 242922 - 243305 (+)
Type: TC
Location: 242922 - 243305 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D parainfluenzae_L
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C129_contig_2368_215 | vegan > omnivore | 1.79017 | 0.00918 |
| C129_contig_2368_215 | vegetarian > omnivore | 1.16530 | 0.01522 |
| C129_contig_2368_216 | vegan > omnivore | 1.07043 | 0.00918 |
| C129_contig_2368_216 | vegetarian > omnivore | 1.35637 | 0.00711 |
| C129_contig_2368_217 | vegan > omnivore | 1.96181 | 0.00918 |
| C129_contig_2368_217 | vegetarian > omnivore | 3.30952 | 0.01522 |