Cluster: C129.CMAG_1_CGC22
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: C129.CMAG_1
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C129_contig_2368 | C129_contig_2368_1698 | 1829182 | 1830210 | + | GT9 |
| TC | C129_contig_2368 | C129_contig_2368_1699 | 1830160 | 1830825 | - | 2.A.115.2.7 |
| pfam | C129_contig_2368 | C129_contig_2368_1700 | 1831016 | 1832557 | + | PFL-like | YjjI-like |
| TC | C129_contig_2368 | C129_contig_2368_1701 | 1832600 | 1834465 | - | 2.A.16.2.2 |
| TC | C129_contig_2368 | C129_contig_2368_1702 | 1834465 | 1834770 | - | 9.B.21.2.1 |
Gene ID: C129_contig_2368_1698
Type: CAZyme
Location: 1829182 - 1830210 (+)
Type: CAZyme
Location: 1829182 - 1830210 (+)
Gene ID: C129_contig_2368_1699
Type: TC
Location: 1830160 - 1830825 (-)
Type: TC
Location: 1830160 - 1830825 (-)
Gene ID: C129_contig_2368_1700
Type: pfam
Location: 1831016 - 1832557 (+)
Type: pfam
Location: 1831016 - 1832557 (+)
Gene ID: C129_contig_2368_1701
Type: TC
Location: 1832600 - 1834465 (-)
Type: TC
Location: 1832600 - 1834465 (-)
Gene ID: C129_contig_2368_1702
Type: TC
Location: 1834465 - 1834770 (-)
Type: TC
Location: 1834465 - 1834770 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D parainfluenzae_L
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C129_contig_2368_1698 | vegan > omnivore | 1.54289 | 0.00918 |
| C129_contig_2368_1699 | vegan > omnivore | 1.51509 | 0.00918 |
| C129_contig_2368_1699 | vegetarian > omnivore | 1.42742 | 0.01522 |