Cluster: C129.CMAG_1_CGC2
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: C129.CMAG_1
- CGC Family ID: CGCFAM_05006
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C129_contig_2368 | C129_contig_2368_130 | 138155 | 138871 | - | 9.B.20.2.2 |
| pfam | C129_contig_2368 | C129_contig_2368_131 | 139037 | 140374 | + | UPF0004 | TRAM | Radical_SAM | TRAM_2 |
| CAZyme | C129_contig_2368 | C129_contig_2368_132 | 140414 | 142432 | + | GT41 |
Gene ID: C129_contig_2368_130
Type: TC
Location: 138155 - 138871 (-)
Type: TC
Location: 138155 - 138871 (-)
Gene ID: C129_contig_2368_131
Type: pfam
Location: 139037 - 140374 (+)
Type: pfam
Location: 139037 - 140374 (+)
Gene ID: C129_contig_2368_132
Type: CAZyme
Location: 140414 - 142432 (+)
Type: CAZyme
Location: 140414 - 142432 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D parainfluenzae_L
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C129_contig_2368_130 | vegetarian > omnivore | 1.16425 | 0.01522 |