Cluster: C129.CMAG_1_CGC16
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 4
- Substrate:
- Genome ID: C129.CMAG_1
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C129_contig_2368 | C129_contig_2368_1154 | 1235543 | 1236316 | - | 3.A.1.14.19 |
| TC | C129_contig_2368 | C129_contig_2368_1155 | 1236316 | 1237365 | - | 3.A.1.14.5 |
| STP | C129_contig_2368 | C129_contig_2368_1156 | 1237381 | 1238496 | - | Peripla_BP_2 |
| pfam | C129_contig_2368 | C129_contig_2368_1157 | 1238596 | 1239735 | - | CCP_MauG |
| CAZyme | C129_contig_2368 | C129_contig_2368_1158 | 1239815 | 1240930 | - | GH103 |
| CAZyme | C129_contig_2368 | C129_contig_2368_1159 | 1240964 | 1241767 | - | GT2 |
| CAZyme | C129_contig_2368 | C129_contig_2368_1160 | 1242185 | 1243066 | - | GT2 |
| NULL(UNKNOWN) | C129_contig_2368 | C129_contig_2368_1161 | 1243059 | 1244258 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | C129_contig_2368 | C129_contig_2368_1162 | 1244266 | 1245036 | - | GT25 |
Gene ID: C129_contig_2368_1154
Type: TC
Location: 1235543 - 1236316 (-)
Type: TC
Location: 1235543 - 1236316 (-)
Gene ID: C129_contig_2368_1155
Type: TC
Location: 1236316 - 1237365 (-)
Type: TC
Location: 1236316 - 1237365 (-)
Gene ID: C129_contig_2368_1156
Type: STP
Location: 1237381 - 1238496 (-)
Type: STP
Location: 1237381 - 1238496 (-)
Gene ID: C129_contig_2368_1157
Type: pfam
Location: 1238596 - 1239735 (-)
Type: pfam
Location: 1238596 - 1239735 (-)
Gene ID: C129_contig_2368_1158
Type: CAZyme
Location: 1239815 - 1240930 (-)
Type: CAZyme
Location: 1239815 - 1240930 (-)
Gene ID: C129_contig_2368_1159
Type: CAZyme
Location: 1240964 - 1241767 (-)
Type: CAZyme
Location: 1240964 - 1241767 (-)
Gene ID: C129_contig_2368_1160
Type: CAZyme
Location: 1242185 - 1243066 (-)
Type: CAZyme
Location: 1242185 - 1243066 (-)
Gene ID: C129_contig_2368_1161
Type:
Location: 1243059 - 1244258 (-)
Type:
Location: 1243059 - 1244258 (-)
Gene ID: C129_contig_2368_1162
Type: CAZyme
Location: 1244266 - 1245036 (-)
Type: CAZyme
Location: 1244266 - 1245036 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D parainfluenzae_L
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C129_contig_2368_1156 | vegan > omnivore | 1.84515 | 0.00918 |
| C129_contig_2368_1156 | vegetarian > omnivore | 1.18780 | 0.01522 |
| C129_contig_2368_1160 | vegetarian > omnivore | 2.42108 | 0.01522 |