Cluster: C129.CMAG_1_CGC12
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: C129.CMAG_1
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C129_contig_2368 | C129_contig_2368_705 | 732612 | 732869 | + | 8.A.8.1.1 |
| TC | C129_contig_2368 | C129_contig_2368_706 | 732948 | 734675 | + | 8.A.7.1.1 |
| TC | C129_contig_2368 | C129_contig_2368_707 | 734735 | 735235 | + | 4.A.1.1.1 |
| pfam | C129_contig_2368 | C129_contig_2368_708 | 735308 | 736507 | + | PMI_typeI_cat | MPI_cupin_dom |
| CAZyme | C129_contig_2368 | C129_contig_2368_709 | 736628 | 739654 | + | GH2 |
Gene ID: C129_contig_2368_705
Type: TC
Location: 732612 - 732869 (+)
Type: TC
Location: 732612 - 732869 (+)
Gene ID: C129_contig_2368_706
Type: TC
Location: 732948 - 734675 (+)
Type: TC
Location: 732948 - 734675 (+)
Gene ID: C129_contig_2368_707
Type: TC
Location: 734735 - 735235 (+)
Type: TC
Location: 734735 - 735235 (+)
Gene ID: C129_contig_2368_708
Type: pfam
Location: 735308 - 736507 (+)
Type: pfam
Location: 735308 - 736507 (+)
Gene ID: C129_contig_2368_709
Type: CAZyme
Location: 736628 - 739654 (+)
Type: CAZyme
Location: 736628 - 739654 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D parainfluenzae_L
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C129_contig_2368_705 | vegetarian > omnivore | 1.08021 | 0.01522 |
| C129_contig_2368_707 | vegan > omnivore | 3.30522 | 0.00918 |
| C129_contig_2368_707 | vegetarian > omnivore | 1.47673 | 0.01522 |
| C129_contig_2368_709 | vegan > omnivore | 1.02684 | 0.00918 |